AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tesi22g00021 ATGTCAGCAACCATCGACTCGAGGGTCGGGGTCGGAGGTGAGGTAGTGAGGGCTGACAAAAGCAGAGGTTGGGTAGTTCAGGGCCTGACCAATAAAGGCATGGGTCACGGTGATAGTGTGCTCATCAATAATGGTCTCAAGCGTGGGGGTCTCGCCGTCCATGACGTGCATATTCTGGTGGCGGAGATGGAAGCTTGTTTGCAAGAACTCAATAATGCAATTCCCGAACGTGAGGTTCTCATTGCTCTTGCAGAAAAGTTCAGTGCTTCATCAGAGCGAGCAGGAAAGATTATTGTGCAAATGAAGCAGGTGTGGAATTGGTTCCAGAATAAGAGATACGCGCAGAGGGCGAAATTGATTAAGGCTCCTGGGAAGCTCAGTGTGTCACCTATGCCTCGGGATGATTCAGTTCCAGTGAGAAATGTACATTCCATGCCGGTTTCTTTAGGAAGGAATGCTTCAGATAATAATACTCAGATGGAGTTTGAAGCCAAGTCAGCTAGGGATGGGGCATGGTATGATGTTGCGACCTTTATTTCTCATAGACTGTTTGAGACGGGTGATCCGTCATTGTTCCTCGTCTTTTCATGTCAATATGGTTGGCCATTTCAGGAAGTTCGGGTTCGATTTGCAGGATTTGAAGCAGAGGAGGATGAGTGGGTAAATGTGCGGAAGCATGTGAGACAACGATCACTTCCATGTGAAGCATCAGAATGTGTTGCAGTACTTCCCGGAGACCTTATACTTTGTTTTCAGGAAGGTAAGGAGCAGGCTCTTTACTTTGACGCTCATGTCCTTGACGCACAAAGAAGGAGACACGATGTAAGAGGATGTCGTTGTAGGTTTCTAGTGCGCTACGATCATGATCAGTCTGAGGAAATTGTGCCACTCAGAAAGGTATGTCGTCGTCCAGAGACTGATTACAGGTTGCAACAACTGCATGCTTTGAAGGAGACTGCATTAGGGGACCTGCGGAACATGGGGAAAGATCCTTCTCTGATCAGCACTTCAAGGGATATCATCAGTTCATCAAACGAAAAAATGCGAAAGCAACATAAAGTGGAAGGAAACACAGATGAGGTGGTCATGGTGACTCCCCTATCTCATGCCAAAGAGCCTGTAACCACAAAAACTACAATGACTGAAATGATGAAGGTTGAAATTGGTGGTTATAATACTGCGGAAACTCCAGATGCCCCTACAGGTGATGCCGGATTGACCATTGGCACAGTTTCCAGCTCTGTCACTTGCTATCCAGAAGGAAGTTAG 1269 46.81 MSATIDSRVGVGGEVVRADKSRGWVVQGLTNKGMGHGDSVLINNGLKRGGLAVHDVHILVAEMEACLQELNNAIPEREVLIALAEKFSASSERAGKIIVQMKQVWNWFQNKRYAQRAKLIKAPGKLSVSPMPRDDSVPVRNVHSMPVSLGRNASDNNTQMEFEAKSARDGAWYDVATFISHRLFETGDPSLFLVFSCQYGWPFQEVRVRFAGFEAEEDEWVNVRKHVRQRSLPCEASECVAVLPGDLILCFQEGKEQALYFDAHVLDAQRRRHDVRGCRCRFLVRYDHDQSEEIVPLRKVCRRPETDYRLQQLHALKETALGDLRNMGKDPSLISTSRDIISSSNEKMRKQHKVEGNTDEVVMVTPLSHAKEPVTTKTTMTEMMKVEIGGYNTAETPDAPTGDAGLTIGTVSSSVTCYPEGS 422
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tesi22g00021 422 Gene3D - 157 233 - -
Tesi22g00021 422 Gene3D - 234 306 - -
Tesi22g00021 422 Pfam SAWADEE domain 159 301 IPR032001 GO:0003682(InterPro)
Tesi22g00021 422 SUPERFAMILY Homeodomain-like 60 116 IPR009057 -
Tesi22g00021 422 PANTHER PROTEIN SAWADEE HOMEODOMAIN HOMOLOG 2 60 366 IPR039276 -
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tesi22g00021 - -
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Tesi Tesi-Chr15:34678222 Tesi22g00021 Tesi-Chr22:2578726 dispersed
Tesi Tesi-Chr21:33291058 Tesi22g00021 Tesi-Chr22:2578726 dispersed
Tesi Tesi-Chr22:2578726 Tesi19g00261 Tesi-Chr19:5595236 transposed