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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi19g00925 ATGCGTGGACTGCGTATCATCCTTGGCGGTGTCAATCCCATGGTTTTATTCCCAATACGCTTCTACAATCCCAAGAGCATCATGGTGCATGTCCACTGCAGTAGCACCAAGCCTTCGCACACCTCTTATCCTCATATGGATATGCTACATTGTTGTCACCTTCAGATTCATCAAAATCCATGTCAGATGACGGGCCTCCTTCAGAGTCAACGTCAGCTGGTGCTCATATCTGTCGCTTCTTTTCTCAGGTGCAAGTTTAATACGGGTCTTGGTGGAAGCAACCCAAAGAAGGCCCTAGCTCTCTTTGCCATGCTTTTCTCATATATTATATATCTACATCCATGTAACCCCTCTAGTTTGGTGCATCATTGCATCTATTTCATCACCATCCTTCATTTCAAGCTCATCTGGAGTCTGCTCTCCAAGGAGTCGATTATCCTGTTGGATTTCTGGCCTAGCATGTTTGGTATGAGGGTCAGACTTGCCCTGGCAGAGAAGGGCCTCAAGTATGAATATAAAGAGGAGGACCTGAGGAACAAGAGCCCTCTGCTTCTTGAGATGAATCCAGTTCATAAGCAAATCCCGGTTCTGATCCACAATGGAAAGCCCATTTGTGAATCTCTGATAATAGTTCAGTATATTGATGAGGTTTGGCACGATAAATCTCCGCTTTTGCGTAGTGACCCATACCAGAGAGCTCAGGCCAGGTTCTGGGCGGACTACGTAGACAAGAAGCTCTATGGACTTGGAAGGAAGGTATGGTCTACCAAAGGAGAAGAGCAGGAAACAGCCAAGAAGGAATTCATAGAGTGCCTTCAGCTTTTGGAAGGCGAGCTTGGAGAGAAGCCTTACTTCGGTGGTGAAAAAATTGGGTTTGTGGATGTGGCTCTCGTGACCTTCTCTTGCTGGTTTTATGCATATGAGAGCTTTGGTAACTTCAGCATAGAGGCGGAGTGCCCCAAGTTGATCGCTTGGACCAAGAGGTGCAAGGAAAAGGAGAACCACACATGTCCCATGGCCTTGTCATGTGAATGA 1035 46.67 MRGLRIILGGVNPMVLFPIRFYNPKSIMVHVHCSSTKPSHTSYPHMDMLHCCHLQIHQNPCQMTGLLQSQRQLVLISVASFLRCKFNTGLGGSNPKKALALFAMLFSYIIYLHPCNPSSLVHHCIYFITILHFKLIWSLLSKESIILLDFWPSMFGMRVRLALAEKGLKYEYKEEDLRNKSPLLLEMNPVHKQIPVLIHNGKPICESLIIVQYIDEVWHDKSPLLRSDPYQRAQARFWADYVDKKLYGLGRKVWSTKGEEQETAKKEFIECLQLLEGELGEKPYFGGEKIGFVDVALVTFSCWFYAYESFGNFSIEAECPKLIAWTKRCKEKENHTCPMALSCE* 345
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi19g00925 344 SFLD Glutathione Transferase (cytosolic) 142 334 IPR040079 -
Vivi19g00925 344 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 147 333 IPR045073 GO:0004364(PANTHER)|GO:0005737(PANTHER)|GO:0006749(PANTHER)
Vivi19g00925 344 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 228 344 IPR010987 -
Vivi19g00925 344 SFLD Main.3: Omega- and Tau-like 142 334 IPR045073 -
Vivi19g00925 344 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 143 222 IPR004045 -
Vivi19g00925 344 FunFam Glutathione S-transferase U20 228 340 - -
Vivi19g00925 344 Pfam Glutathione S-transferase, N-terminal domain 144 216 IPR004045 -
Vivi19g00925 344 SUPERFAMILY Thioredoxin-like 145 246 IPR036249 -
Vivi19g00925 344 CDD GST-C-Tau 229 333 IPR045074 GO:0004364(InterPro)|GO:0006749(InterPro)
Vivi19g00925 344 Pfam Glutathione S-transferase, C-terminal domain 256 331 IPR004046 -
Vivi19g00925 344 CDD GST-N-Tau 145 218 - -
Vivi19g00925 344 Gene3D - 228 340 - -
Vivi19g00925 344 FunFam Tau class glutathione S-transferase 140 227 - -
Vivi19g00925 344 SUPERFAMILY GST C-terminal domain-like 216 333 IPR036282 -
Vivi19g00925 344 Gene3D Glutaredoxin 141 227 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi19g00925 K00799 glutathione S-transferase [EC:2.5.1.18]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Vivi Vivi-Chr19:16675414 Vivi19g00927 Vivi-Chr19:16876921 dispersed
Vivi Vivi-Chr19:16626400 Vivi19g00925 Vivi-Chr19:16675414 tandem
Vivi Vivi-Chr19:16675414 Vivi19g00926 Vivi-Chr19:16803108 tandem
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Vivi17g00547 . 93 229 Glutathione S-transferase gene family AT1G74590 42.754 3.00e-38 129.0
Vivi17g00546 . 4 231 Glutathione S-transferase gene family AT5G62480 53.509 5.27e-89 268.0
Vivi17g00253 . 48 201 Glutathione S-transferase gene family AT2G29420 44.805 2.94e-48 154.0
Vivi17g00252 . 48 201 Glutathione S-transferase gene family AT2G29420 45.455 1.44e-49 158.0
Vivi18g00151 . 54 262 Glutathione S-transferase gene family AT2G47730 48.571 4.98e-68 208.0
Vivi18g00210 . 1 266 Glutathione S-transferase gene family AT1G77290 70.037 4.97e-143 400.0
Vivi7g00260 . 54 260 Glutathione S-transferase gene family AT2G47730 47.343 5.87e-63 202.0
Vivi7g00259 . 1 215 Glutathione S-transferase gene family AT3G62760 63.721 1.53e-103 296.0
Vivi7g00258 . 1 215 Glutathione S-transferase gene family AT3G62760 64.651 1.17e-104 299.0
Vivi15g00191 . 17 212 Glutathione S-transferase gene family AT3G09270 47.716 4.38e-57 180.0
Vivi19g00848 . 47 216 Glutathione S-transferase gene family AT1G78380 68.824 2.23e-89 258.0
Vivi19g00849 . 47 216 Glutathione S-transferase gene family AT1G78380 67.059 4.93e-88 256.0
Vivi19g00853 . 68 216 Glutathione S-transferase gene family AT1G78380 66.443 1.07e-71 213.0
Vivi19g00854 . 47 106 Glutathione S-transferase gene family AT1G78340 80.0 6.99e-33 114.0
Vivi19g00855 . 47 219 Glutathione S-transferase gene family AT1G17180 69.942 1.67e-88 256.0
Vivi19g00856 . 47 216 Glutathione S-transferase gene family AT1G78380 67.647 3.01e-88 256.0
Vivi19g00864 . 47 216 Glutathione S-transferase gene family AT1G78380 69.412 1.08e-89 259.0
Vivi19g00865 . 48 215 Glutathione S-transferase gene family AT1G78370 66.667 2.30e-86 251.0
Vivi15g00085 . 97 217 Glutathione S-transferase gene family AT3G09270 40.164 1.47e-24 93.6
Vivi2g00333 . 2 229 Glutathione S-transferase gene family AT5G41210 72.368 2.95e-128 362.0
Vivi1g00910 . 3 220 Glutathione S-transferase gene family AT1G74590 46.119 3.41e-69 211.0
Vivi1g00909 . 3 216 Glutathione S-transferase gene family AT1G74590 47.442 5.85e-70 215.0
Vivi1g00831 . 1 222 Glutathione S-transferase gene family AT1G10370 61.261 5.17e-94 275.0
Vivi1g00830 . 1 222 Glutathione S-transferase gene family AT1G10370 65.766 8.29e-104 301.0
Vivi19g01026 . 149 218 Glutathione S-transferase gene family AT3G09270 30.0 3.43e-07 44.7
Vivi12g00072 . 1 214 Glutathione S-transferase gene family AT2G30860 66.355 6.76e-111 315.0
Vivi12g00071 . 1 209 Glutathione S-transferase gene family AT2G30860 65.55 8.94e-103 294.0
Vivi12g01254 . 2 215 Glutathione S-transferase gene family AT2G02390 64.486 1.73e-100 295.0
Vivi12g01253 . 6 215 Glutathione S-transferase gene family AT2G02390 60.476 1.25e-92 269.0
Vivi12g01248 . 170 218 Glutathione S-transferase gene family AT2G02380 65.306 1.69e-16 69.3
Vivi16g00047 . 6 216 Glutathione S-transferase gene family AT2G29420 46.083 3.93e-67 205.0
Vivi16g00048 . 6 210 Glutathione S-transferase gene family AT2G29420 47.867 1.84e-66 203.0
Vivi16g00053 . 3 211 Glutathione S-transferase gene family AT3G09270 49.065 7.30e-64 196.0
Vivi6g00541 . 7 219 Glutathione S-transferase gene family AT2G29420 51.174 4.17e-80 241.0
Vivi6g00540 . 7 225 Glutathione S-transferase gene family AT2G29420 55.251 2.48e-89 266.0
Vivi6g00350 . 12 235 Glutathione S-transferase gene family AT5G02790 69.196 5.60e-117 332.0
Vivi8g00671 . 12 235 Glutathione S-transferase gene family AT5G02790 71.875 8.10e-120 339.0
Vivi8g00665 . 12 235 Glutathione S-transferase gene family AT5G02790 70.089 6.02e-117 332.0
Vivi8g00489 . 8 219 Glutathione S-transferase gene family AT2G29420 51.389 6.82e-73 219.0
Vivi15g00477 . 10 219 Glutathione S-transferase gene family AT2G02380 56.667 9.76e-84 246.0
Vivi5g00711 . 97 215 Glutathione S-transferase gene family AT3G09270 31.092 6.59e-18 74.7
Vivi5g00712 . 97 215 Glutathione S-transferase gene family AT3G09270 31.092 9.62e-18 74.3
Vivi5g00714 . 97 215 Glutathione S-transferase gene family AT3G09270 30.252 2.22e-16 72.0
Vivi7g00261 . 54 262 Glutathione S-transferase gene family AT2G47730 65.072 3.22e-101 292.0
Vivi7g00262 . 36 87 Glutathione S-transferase gene family AT4G02520 73.077 3.71e-24 89.0
Vivi5g00815 . 72 215 Glutathione S-transferase gene family AT3G09270 44.138 1.18e-33 116.0
Vivi5g00816 . 10 203 Glutathione S-transferase gene family AT2G29420 47.179 2.54e-62 191.0
Vivi5g00820 . 7 212 Glutathione S-transferase gene family AT3G09270 50.725 5.27e-63 194.0
Vivi5g00823 . 95 157 Glutathione S-transferase gene family AT1G78340 47.143 3.02e-11 55.1
Vivi5g00826 . 6 97 Glutathione S-transferase gene family AT2G29450 70.652 1.46e-41 135.0
Vivi14g00714 . 1 257 Glutathione S-transferase gene family AT5G16710 66.667 2.50e-128 363.0
Vivi14g00178 . 5 58 Glutathione S-transferase gene family AT3G09270 61.111 1.07e-20 79.3
Vivi13g00202 . 12 234 Glutathione S-transferase gene family AT5G02790 67.265 2.94e-111 317.0
Vivi8g00819 . 97 222 Glutathione S-transferase gene family AT3G09270 55.556 1.30e-43 140.0
Vivi8g00818 . 97 224 Glutathione S-transferase gene family AT3G09270 53.906 1.78e-43 140.0
Vivi8g00817 . 97 224 Glutathione S-transferase gene family AT3G09270 53.125 1.76e-43 140.0
Vivi18g01356 . 10 218 Glutathione S-transferase gene family AT2G29420 46.667 2.90e-62 194.0
Vivi4g00708 . 4 214 Glutathione S-transferase gene family AT1G78380 63.679 7.89e-94 272.0
Vivi4g00727 . 1 213 Glutathione S-transferase gene family AT5G17220 57.277 1.25e-93 271.0
Vivi4g00729 . 1 213 Glutathione S-transferase gene family AT3G03190 54.46 1.51e-86 253.0
Vivi4g00732 . 1 47 Glutathione S-transferase gene family AT5G17220 63.83 4.03e-17 69.7
Vivi19g00917 . 47 216 Glutathione S-transferase gene family AT1G78380 65.882 3.00e-84 245.0
Vivi19g00921 . 47 219 Glutathione S-transferase gene family AT1G17180 69.364 8.40e-89 257.0
Vivi19g00922 . 94 219 Glutathione S-transferase gene family AT1G78380 59.524 2.78e-51 160.0
Vivi19g00924 . 68 216 Glutathione S-transferase gene family AT1G78380 63.087 1.12e-65 197.0
Vivi19g00925 . 4 194 Glutathione S-transferase gene family AT1G78380 70.157 7.45e-103 300.0
Vivi19g00926 . 114 224 Glutathione S-transferase gene family AT1G53680 54.955 4.56e-36 121.0
Vivi19g00927 . 47 219 Glutathione S-transferase gene family AT1G17180 71.098 4.93e-90 260.0
Vivi19g00928 . 17 218 Glutathione S-transferase gene family AT1G17180 60.099 6.84e-87 253.0
Vivi19g00929 . 47 218 Glutathione S-transferase gene family AT1G17180 64.535 4.45e-81 238.0
Vivi19g00933 . 47 218 Glutathione S-transferase gene family AT1G17180 63.953 4.62e-80 235.0