AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi19g00944 ATGACCCGCTCACCCCCACCTCGTCTCAATCACTTATTGCCCACCATAAGGCCCAACATAAACTGCTCTCTCCACTCCCCTTCTGTACTCCATTTCCCAAAGCACACATCATCAAGCACTGGCGTTGCTACTGTTAAAACCACGCTCCCAAAAGAGAAGGATGGCTTTTCTTCCTCTGTCTCACCGCAATGGAACTTTTTGCAAAGCGCTGCTGCCATGGCCTTGGATGCCGTGGAGACCGCGTTGGTAGCACGCGAGACCCAGCACCCTCTTCCCAAGACCGCAGACCCCAGAGTGCAAATCGCCGGTAATTTTGCTCCGGTACCTGAGCAGCCCGTCCATCACTCTCTCCCGGTGGATGGTCGAATCCCAGACTGCATTCAAGGCGTATACACTCGGAACGGCGCCAATCCCCTCCACAAGCCTGTCGCCGGCCACCATCTCTTCGACGGAGACGGCATGCGTCTGATCCAAGAGCGAGATTTCGGCCGGCCGGTTCACGGCACCGGCGTTGCCAACGCTGGGCTCGTCTATTTCAACCGTAGACTCCTCGCCATGTCGGAGGACGACTTGCCGTACCAAATCCGCGTGACCCCTTCCGGAGACCTGGAGACGGTGGGTCGCTACGACTTCGAGGGTCAGCTCCGTTCCACAATGATCGCTCACCCCAAAGTTGATCCAGTGTCTGGAGAGATGTTCGCTCTGAGCTATGATGTGGTCCAGAAGCCATACCTCAACGGTGGCTCTCCTGTGGTCTACGAGAAGAACAAGATGTCGCGGTTCGGGGTGCTGGACAAGAATGCTACTGACGCTTCTGGTATGCGATGGATAGAGGCCCCTGATTGCTTCTGCTTCCATCTCTGGAACGCTTGGGAAGAGCCGGAGACCGATGAAGTCGTGGTGATTGGCTCCTGCATGACTCCACCCGACTCCATTTTCAACGAATGCGACGAAGGCCTCAAGAGCGTCCTCTCCGAAATCAGACTTAATCTGAAGACCGGAAAGTCCACACGCCGCCCTATACTTCCGGAATCGGAGCAAGTGAACTTGGAAGCCGGGATGGTGAACCGGAACCGCCTGGGAAGAAAAACCCAGTTCGCCTATCTGGCCGTGGCTGAGCCATGGCCCAAGGTGTCTGGTTTCGCCAAGGTTGACCTCTCAACTGGGCAAGTCAGCAAGTACATATATGGAGAGCAGAGGTATGGTGGTGAGCCTCTGTTCCTTCCAAGAGACCCCAACTCTGGCAGGGAAGATGATGGGTACATCCTGGCTTTTGTGCACGACGAGAAGACATGGAAATCAGAGCTGCAGATAGTGAACGCCACGAATTTACAGCTAGAAGCTTCTGTGAAACTTCCCTCACGAGTTCCCTATGGATTCCACGGCACCTTCATAAGCTCCAAGGAATTAGAGAAGCAAGCTTGA 1425 55.02 MTRSPPPRLNHLLPTIRPNINCSLHSPSVLHFPKHTSSSTGVATVKTTLPKEKDGFSSSVSPQWNFLQSAAAMALDAVETALVARETQHPLPKTADPRVQIAGNFAPVPEQPVHHSLPVDGRIPDCIQGVYTRNGANPLHKPVAGHHLFDGDGMRLIQERDFGRPVHGTGVANAGLVYFNRRLLAMSEDDLPYQIRVTPSGDLETVGRYDFEGQLRSTMIAHPKVDPVSGEMFALSYDVVQKPYLNGGSPVVYEKNKMSRFGVLDKNATDASGMRWIEAPDCFCFHLWNAWEEPETDEVVVIGSCMTPPDSIFNECDEGLKSVLSEIRLNLKTGKSTRRPILPESEQVNLEAGMVNRNRLGRKTQFAYLAVAEPWPKVSGFAKVDLSTGQVSKYIYGEQRYGGEPLFLPRDPNSGREDDGYILAFVHDEKTWKSELQIVNATNLQLEASVKLPSRVPYGFHGTFISSKELEKQA* 475
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi19g00944 474 Pfam Retinal pigment epithelial membrane protein 167 243 IPR004294 GO:0016702(InterPro)
Vivi19g00944 474 Pfam Retinal pigment epithelial membrane protein 105 154 IPR004294 GO:0016702(InterPro)
Vivi19g00944 474 Pfam Retinal pigment epithelial membrane protein 246 466 IPR004294 GO:0016702(InterPro)
Vivi19g00944 474 PANTHER BETA-CAROTENE DIOXYGENASE 165 245 IPR004294 GO:0009570(PANTHER)|GO:0010436(PANTHER)|GO:0016121(PANTHER)|GO:0016702(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi19g00944 K09840 9-cis-epoxycarotenoid dioxygenase [EC:1.13.11.51]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Vivi Vivi-Chr10:6374536 Vivi19g00944 Vivi-Chr19:17645200 dispersed
Vivi Vivi-Chr19:17645200 Vivi5g00851 Vivi-Chr5:11589343 dispersed