AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi19g00957 ATGGCAGAAAGCAGAGAGAAGAAAGAGAGTAGGAGACAAGTGTGGAGGTGGTCTTTGGGGGCTCCTCTCCTTGCTGTCTTAGTGGCGACTGCAATCACCTCAATCGCTTTTCCCGAAATCTCGCTTTTTAACGGCAACACCAACGACAATCGGAAGTTCTGCCACTGTGCTCAGTCTATTACCATTTTGCTAATTTTTGTGGATTTTGTGCAGGATTCACTGAAATACACTGGCATTGTTGAGGACTGCTGTTGTCATTATGAGACAGTTAGTCTTAATGAGGAAGTCTTGCATCCTTGGCTCCAAGAACTTGTCACAATGCCCTTCTTCCGATATTTTAAGGTTAAGCTGTGGTGTAACTGCCCTTTTTGGCCTGATGATGGTATGTGCAAGCTGCGTGATTGCAGTGTTTGTGAATGTCCTGAAAGTGAATTTCCAGAACCTTTTAAGAGCCCATTTAAACGCACTCTTCAATCTGACAATTTAGCCTGTCAAGAGGGAAAGCCACAGGCTACAGTGGATCGGACACTAGATAGTAAAGCTTTCAGAGGTTGGATAGAAACAGATAATCCATGGACAAATGATGATGAGACTGATAATGCTGAGATGACATATGTAAATCTCCAATTGAACCCTGAACGTTACACTGGCTATGCTGGTCCGTCCGCCAGAAGAATATGGGATGCTATCTATTCAGAAAATTGTCCAAACCATTCACATGGAGAGACTCTCCAGGAGAAAAATTTGTTGTACAAATTAATATCCGGTCTTCACTCCTCAATCTCAATCCACATAGCTGCTGATTATCTCCTTGATGAAACTACCAACCTGTGGGGCCAAAATCTTGGGCTGATGCATGATCGAGTTTTGAGATACCCTGATCGAGTTAGAAACCTGTACTTCACTTTCCTTTTTGTTCTCCGTGCCATGAGAAAAGCATCAGCTTATTTGGAGCAGGCTGAGTACAACACAGGTAACCATGCAGAGGACCTAAAAACACAATCCTTGATGAGGCAGCTCCTTTGCAATCCCAAACTCCAAGCTGCATGTCCACTTTCTTTTGATGAAGCTAAGCTGTGGCAAGGCCAAAGTGGACCTGAACTGAAACAACAGTTTCAAAAGCAGTTCAAACACATTAGTGCCTTGATGGACTGTGTTGGATGTGAGAAGTGCCGGCTTTGGGGAAAGCTTCAGATTCTTGGTCTTGGCACTGCTTTAAAAATCCTCTTCTCTGTTGATGATCAAAACCACACACCTGTAAGTCTCTGCAGTTGCAACGGAATGAAGTGA 1290 43.72 MAESREKKESRRQVWRWSLGAPLLAVLVATAITSIAFPEISLFNGNTNDNRKFCHCAQSITILLIFVDFVQDSLKYTGIVEDCCCHYETVSLNEEVLHPWLQELVTMPFFRYFKVKLWCNCPFWPDDGMCKLRDCSVCECPESEFPEPFKSPFKRTLQSDNLACQEGKPQATVDRTLDSKAFRGWIETDNPWTNDDETDNAEMTYVNLQLNPERYTGYAGPSARRIWDAIYSENCPNHSHGETLQEKNLLYKLISGLHSSISIHIAADYLLDETTNLWGQNLGLMHDRVLRYPDRVRNLYFTFLFVLRAMRKASAYLEQAEYNTGNHAEDLKTQSLMRQLLCNPKLQAACPLSFDEAKLWQGQSGPELKQQFQKQFKHISALMDCVGCEKCRLWGKLQILGLGTALKILFSVDDQNHTPVSLCSCNGMK* 430
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi19g00957 429 PANTHER ERO1-RELATED 48 419 IPR007266 GO:0005783(InterPro)|GO:0005789(PANTHER)|GO:0015035(InterPro)|GO:0015035(PANTHER)|GO:0016972(InterPro)|GO:0034975(PANTHER)|GO:0034975(InterPro)|GO:0071949(InterPro)
Vivi19g00957 429 PIRSF ERO 30 426 IPR007266 GO:0005783(InterPro)|GO:0015035(InterPro)|GO:0016972(InterPro)|GO:0034975(InterPro)|GO:0071949(InterPro)
Vivi19g00957 429 Pfam Endoplasmic Reticulum Oxidoreductin 1 (ERO1) 97 418 IPR007266 GO:0005783(InterPro)|GO:0015035(InterPro)|GO:0016972(InterPro)|GO:0034975(InterPro)|GO:0071949(InterPro)
Vivi19g00957 429 SUPERFAMILY ERO1-like 85 417 IPR037192 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi19g00957 K10950 ERO1-like protein alpha [EC:1.8.4.-]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Vivi Vivi-Chr10:6720512 Vivi19g00957 Vivi-Chr19:18332102 dispersed
Vivi Vivi-Chr19:18332102 Vivi1g00721 Vivi-Chr1:8304390 dispersed