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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi19g00965 ATGGCAGCCTCAGTGATGAGCTCATTGAGCTTGAAACCATCTCCTTTCAGTGTTGAGAGGAGAGCAGTCAGAGGCCTGCCTTCTCTTGCCAGAAGCTCCTCTTCTTTCAGGGTTGAGGCCAGTGGTGGCAAGAAGATCAAAACTGACAAGCCTTATGGAATTGGAGGTGGCATGAAATTGTCTGATGGACTTGACGCATCTGGCAGAAAGGGCAAGGGAAAGGGAGTCTACCAATTCGTCGATAAATACGGTGCCAACGTGGATGGATACAGTCCAATCTACAGTCCTGACGAATGGTCTCCAGGTGGTGATGTGTATGTTGGTGGTACCACAGGATTATTGATTTGGGCAGTGACCCTAGCAGGGCTTCTACTTGGGGGTGCTCTTCTTGTGTACAACACAAGTGCTTTGGCACAGTAG 420 49.52 MAASVMSSLSLKPSPFSVERRAVRGLPSLARSSSSFRVEASGGKKIKTDKPYGIGGGMKLSDGLDASGRKGKGKGVYQFVDKYGANVDGYSPIYSPDEWSPGGDVYVGGTTGLLIWAVTLAGLLLGGALLVYNTSALAQ* 140
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi19g00965 139 Pfam Photosystem II 10 kDa polypeptide PsbR 41 138 IPR006814 GO:0009523(InterPro)|GO:0009654(InterPro)|GO:0015979(InterPro)|GO:0042651(InterPro)
Vivi19g00965 139 PANTHER PHOTOSYSTEM II 10 KDA POLYPEPTIDE, CHLOROPLASTIC 1 139 IPR006814 GO:0009523(InterPro)|GO:0009654(InterPro)|GO:0015979(InterPro)|GO:0042651(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi19g00965 K03541 photosystem II 10kDa protein