AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi19g01032 ATGCTAGTTACGGTTTCAGGTCTTAGCAGTATGATCCTCGTAAATAAGAGAAGAGCGATGGAACTCTTCCCAGAAAGTGTGACAAAACTTTGGAATGAATGGGAACTCCGCGCATTGGTTTTGTTGAGCCTTTTCTTACAAATTGTGCTCATACTCTTGGGTAACAGGAGGAAATATATAGCTAGTAACTGGGTCAGAATCATCATTTGGCTAGCTTATTTAGCTGCAGATTGGATTGCAGCAGTCTGTATTGGCGTCCTGTCCAATGAGAATGGAGATGACAACTCATCACAACCAAACAGTTTGATATGGGCATTTTGGGCACCATTTCTGCTGCTGCACCTTGGCGGTCCGGATACTATTACAGCCTATTCATTAGAGGATAATGAATTATGGTTAAGACACTTTCTTGCGCTAGTCATCCAGTTTGGAGGGACATTTTACATTTTTCTTAGGTCCTGGAAGTCCAAACTGCTTAATATTCTGGCCATTCCAATTTTTGTGGCAGGACTCATCAAGTATGGGGAAAGGACCTGGGTTCTAAGGTCTGCAAGCAGTAAAACTTCTAGGACAGTGCATTCTCCTCCAGAAGGAGACATTTTGCAGCAGGCTTATTACTTCTTCGAAACTTTCAAGGTGGCTTTTGAAGTGGTTGAGATTGAGCTTGGATTCATGTACGATGTTCTCTACACAAAGGCAACTGTGACTTGCTCTAGATGGGGCAGCCTCCTCCGCTCGATTAGTTTGAGTTTCACCATTTCTGCATTCATAGCCTTCTTGACCATTGACAGGCAAGAGTACTCAACTATTGATGTGATTATAACGTACTTGTTGCTGGTTGGAGCTATTGTTCTAGAGATCTATGCCATTCTTGTACTGCTTTTCTCAGATTGGACTAAGCGGTGGTCAAAAATATCAAAGAGTGCCTCAGATATTGAGGCCGACTTCAGTCATAGCATTCTTCTCTGGCACATTGCAACTGATCTCTGCTATGAGAATGATGCAGAGAAGAATCCAGATTGTAAAGCGTGCAAGGTGCTTTCTGATTATATGTTGTATCTTCTGGTCATGTGCCCTTTCATGCTGCCTGACGGAATTGGGGAGATTAGATATCGAGACAGCTGCGCCGAGGCTAAAGAATTCTTCAAGGATAGAAAGCACATAAAAAGTAGAACCCAAGCTTGCAAAGATTTACTGAGACTGATGCGGGGTGTGTGGGTGGAGATGCTATGTTACGCTGCAAGTCAATGTCGGCCGAATCAGCATGCCAAGCAGCTCAGGCGAGGCGGAGAGCTGCTCACTCATGTCTGGCTTCTCATGGCTCATCTTGATGTAAGAGAAAATTTCCAGATTTCACAAGGCAATGCAAAAGGTGGGATAATTGTGAGCTAG 1392 43.75 MLVTVSGLSSMILVNKRRAMELFPESVTKLWNEWELRALVLLSLFLQIVLILLGNRRKYIASNWVRIIIWLAYLAADWIAAVCIGVLSNENGDDNSSQPNSLIWAFWAPFLLLHLGGPDTITAYSLEDNELWLRHFLALVIQFGGTFYIFLRSWKSKLLNILAIPIFVAGLIKYGERTWVLRSASSKTSRTVHSPPEGDILQQAYYFFETFKVAFEVVEIELGFMYDVLYTKATVTCSRWGSLLRSISLSFTISAFIAFLTIDRQEYSTIDVIITYLLLVGAIVLEIYAILVLLFSDWTKRWSKISKSASDIEADFSHSILLWHIATDLCYENDAEKNPDCKACKVLSDYMLYLLVMCPFMLPDGIGEIRYRDSCAEAKEFFKDRKHIKSRTQACKDLLRLMRGVWVEMLCYAASQCRPNQHAKQLRRGGELLTHVWLLMAHLDVRENFQISQGNAKGGIIVS* 464
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi19g01032 463 PANTHER OS01G0798800 PROTEIN-RELATED 24 302 - -
Vivi19g01032 463 Pfam Protein of unknown function, DUF594 393 444 IPR007658 -
Vivi19g01032 463 Pfam Domain of unknown function (DUF4220) 210 310 IPR025315 -
Vivi19g01032 463 Pfam Domain of unknown function (DUF4220) 70 194 IPR025315 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi19g01032 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Vivi Vivi-Chr19:20515117 Vivi5g01251 Vivi-Chr5:22856751 dispersed
Vivi Vivi-Chr19:20500225 Vivi19g01032 Vivi-Chr19:20515117 tandem