Hierarchical alignments with the <em>Euptelea pleiosperma</em> genome as reference

Gene Search

Species

Gene ID

Example:

Or, Query Sequence

Example:

Hierarchical alignments with the Euptelea pleiosperma genome as reference

Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Asteraceae genomes. We used Euptelea pleiosperma as a reference, and by comparing homologous gene locus maps and Ks values between Euptelea pleiosperma and other Asteraceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We constructed a 25×25,104 macro-matrices.

Query Sequence

Or, Gene ID

Species

Eupl_1	Eupl_2	Nenu_1	Nenu_2	Tesi_1	Tesi_2	Tesi_3	Tesi_4	Busi_1	Busi_2	Vivi_1	Vivi_2	Vivi_3	Nin_1	Nin_2	Nin_3	Arla_1	Arla_2	Arla_3	Arla_4	Arla_5	Arla_6	Arla_7	Arla_8	Arla_9
Eupl14g00990	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Eupl14g00991	.	.	.	.	.	Tesi21g00642	.	.	Busi8g00437	.	.	.	.	.	Nin5g01540	.	.	.	.	.	.	.	.	.
Eupl14g00992	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Eupl14g00993	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Eupl14g00994	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Eupl14g00995	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Eupl14g00996	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Eupl14g00997	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Eupl14g00998	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Eupl14g00999	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.

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Gene_GFF

Chromosome	Start	End	Strand	Old_gene	Gene	Num
8	5937897	5958035	-	BUSI_015924-RA	Busi8g00437	437
14	15245022	15274984	-	evm.model.CTG_278.37	Eupl14g00990	990
14	15277087	15284770	-	evm.model.CTG_278.38	Eupl14g00991	991
14	15347057	15349544	-	evm.model.CTG_446.4	Eupl14g00992	992
14	15409159	15412148	-	evm.model.CTG_446.6	Eupl14g00993	993
14	15462153	15472141	-	evm.model.CTG_446.7	Eupl14g00994	994
14	15475778	15476997	+	evm.model.CTG_446.8	Eupl14g00995	995
14	15536829	15540893	-	evm.model.CTG_446.10	Eupl14g00996	996
14	15599844	15600155	-	evm.model.CTG_446.12	Eupl14g00997	997
14	15600511	15602022	-	evm.model.CTG_446.13	Eupl14g00998	998
14	15603587	15604489	-	evm.model.CTG_446.14	Eupl14g00999	999
5	24089441	24091832	+	NinS14353.t1	Nin5g01540	1540
21	13325257	13376355	-	Tesin21G0069500.1	Tesi21g00642	642

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