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Asteraceae Genomic Research Platform

Gene Search

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Example:

Hierarchical alignments with the Euptelea pleiosperma genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Asteraceae genomes. We used Euptelea pleiosperma as a reference, and by comparing homologous gene locus maps and Ks values between Euptelea pleiosperma and other Asteraceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We constructed a 25×25,104 macro-matrices.


Select Eupl_1 Eupl_2 Nenu_1 Nenu_2 Tesi_1 Tesi_2 Tesi_3 Tesi_4 Busi_1 Busi_2 Vivi_1 Vivi_2 Vivi_3 Nin_1 Nin_2 Nin_3 Arla_1 Arla_2 Arla_3 Arla_4 Arla_5 Arla_6 Arla_7 Arla_8 Arla_9
Eupl14g01000 . . . . . . . . . . . . . . . . . . . . . . . .
Eupl14g01001 . . . . . . . . . . . . . . . . . . . . . . . .
Eupl14g01002 . . . . . . . . . . . . . . . . . . . . . . . .
Eupl14g01003 . . . . . . . . . . . . . . . . . . . . . . . .
Eupl14g01004 . . . . . . . . . . . . . . . . . . . . . . . .
Eupl14g01005 . . . . Tesi1g00927 . . . . . . . . . Nin5g01539 . . . . . . . . .
Eupl14g01006 . . Nenu6g01121 Tesi1g00378 . . . . . . . . Nin6g00960 . . . . . . . . . . .
Eupl14g01007 . Nenu1g00648 Nenu6g01120 . Tesi1g00926 . Tesi22g00290 Busi12g00603 . . . . Nin6g00964 . . . . . . . . . . .
Eupl14g01008 . Nenu1g00647 . Tesi1g00379 . . . . Busi8g00438 . . . Nin6g00966 . . . . . . . . . . .
Eupl14g01009 . Nenu1g00646 Nenu6g01118 . . Tesi21g00643 . . . Vivi15g00367 . . Nin6g00968 . . Arla13g00336 . . . . . . . .
   
Gene_GFF
Select Chromosome Start End Strand Old_gene Gene Num
13 25689035 25694602 - evm.model.000064F.46 Arla13g00336 336
12 29503251 29503756 - BUSI_023152-RA Busi12g00603 603
8 5978107 5978976 - BUSI_015927-RA Busi8g00438 438
14 15622167 15649521 - evm.model.CTG_446.15 Eupl14g01000 1000
14 15654835 15655419 - evm.model.CTG_446.16 Eupl14g01001 1001
14 15655430 15656209 - evm.model.CTG_446.17 Eupl14g01002 1002
14 15657237 15659096 - evm.model.CTG_446.18 Eupl14g01003 1003
14 15768664 15775798 - evm.model.CTG_446.22 Eupl14g01004 1004
14 15777371 15803784 - evm.model.CTG_446.23 Eupl14g01005 1005
14 15842884 15848127 + evm.model.CTG_446.26 Eupl14g01006 1006
14 15850813 15855832 + evm.model.CTG_446.27 Eupl14g01007 1007
14 15860891 15866839 - evm.model.CTG_446.28 Eupl14g01008 1008
14 15989191 16001273 + evm.model.CTG_446.31 Eupl14g01009 1009
1 18103131 18107962 - OF00660.mRNA1 Nenu1g00646 646
1 18155026 18156105 + OF00661.mRNA1 Nenu1g00647 647
1 18218278 18219523 - OF00662.mRNA1 Nenu1g00648 648
6 38243744 38251666 - OF11026.mRNA1 Nenu6g01118 1118
6 38282420 38283195 - OF11024.mRNA1 Nenu6g01120 1120
6 38291170 38300997 - OF11023.mRNA1 Nenu6g01121 1121
5 24082799 24084602 + NinS14352.t1 Nin5g01539 1539
6 11484862 11494807 + NinS16413.t1 Nin6g00960 960
6 11542211 11545450 + NinS16417.t1 Nin6g00964 964
6 11585103 11586670 - NinS16419.t1 Nin6g00966 966
6 11624197 11630481 + NinS16421.t1 Nin6g00968 968
1 7475201 7492460 + Tesin01G0040300.1 Tesi1g00378 378
1 7497173 7498237 - Tesin01G0040400.1 Tesi1g00379 379
1 21159281 21160354 - Tesin01G0097300.1 Tesi1g00926 926
1 21174713 21195828 + Tesin01G0097400.1 Tesi1g00927 927
21 13418607 13424749 + Tesin21G0069600.1 Tesi21g00643 643
22 21128783 21129619 - Tesin22G0031000.1 Tesi22g00290 290
15 13256865 13259160 - GSVIVT01018204001 Vivi15g00367 367
       
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