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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Aster-Anccalling

Reconstructing ancestral genomes supports the inference of new genomic chromosome karyotypes in Asteraceae and the reconstruction of ancient gene evolutionary histories. We provide detailed information for 29 AAGs, including GFF, PEP, and CDS files for each AAG, along with the number of inferred ancient genes located on ancient chromosomes. These AAGs collectively cover 463 ancient chromosomes and 404,036 ancient genes.
Query Ancestral Genes

Ancestral Candidate Search

Search query sequences against selected ancestral chromosome databases and return all hits passing the selected thresholds.

  • 1. Query sequence
  • 2. Selected ancestors
  • 3. Filter hits
  • 4. Candidate genes

Ancestral Gene Tracing

Search only the bottom-layer extant species shown in the ancestral tree, keep the best matched gene for each query, then report the corresponding ancestral chromosome relationships when available.

  • 1. Query sequence
  • 2. Bottom-layer species
  • 3. Best matched gene
  • 4. Ancestral tracing

Ancestral Candidate Search

This mode returns all ancestral hits that meet the selected E-value, score, and identity thresholds.

Ancestral Gene Tracing

This mode searches only extant species that are currently linked to ancestral chromosome relationships, keeps the best matched gene for each query, and reports the relationships available in the system.
Ancestral Genome and Visualization Analysis Module
for Deciphering the Evolution of New Genomes

Ancestral Dotplot

Ancestor Name CDS PEP LENS GFF
AAKI Download Download Download Download
AAKII Download Download Download Download
AAKIII Download Download Download Download
ACAK Download Download Download Download
ASAKI Download Download Download Download
ASAKII Download Download Download Download
ASAKIII Download Download Download Download
ASAKIV Download Download Download Download
ASAKV Download Download Download Download
ASAKVI Download Download Download Download
ASAKVII Download Download Download Download
ASAKVIII Download Download Download Download
ASAKIX Download Download Download Download
ASAKX Download Download Download Download
ASAKXI Download Download Download Download
ASAKXII Download Download Download Download
ASAKXIII Download Download Download Download
ASAKXIV Download Download Download Download
ASAKXV Download Download Download Download
ASAKXVI Download Download Download Download
ASAKXVII Download Download Download Download
ASAKXVIII Download Download Download Download
ASAKXIX Download Download Download Download
CAAKI Download Download Download Download
CAAKII Download Download Download Download
CAAKIII Download Download Download Download
CAAKIV Download Download Download Download
CIAKI Download Download Download Download
CIAKII Download Download Download Download