AGRP
Asteraceae Genomic Research Platform
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Genomics
Genome
JBrowse
GO-annotations
KEGG-pathways
Regulatory proteins
N6-methyladenosine(m6A)
Gene duplication type
Transposable elements
Geno-Syn
Aster-Blocks
Aster-Dotplots
Aster-Alignments
Hean-MGAs
Aria-MGAs
Vivi-MGAs
Eupl-MGAs
Aster-Evogenes
Aster-Ancgenome
Aster-Anccalling
Gene family
Aster-Orthologous
Aster-Genefamiles
Aster-Rubbergenes
Aster-Inulingenes
Multi-Omics
Aster-Transcriptome
Aster-Metabolome
Aster-Metabolomics
Aster-Floralscent
Aster-Pangenome
Aster-Infor
Aster-Encyclopedia
Aster-Agroecology
Aster-Exterdata
Aster-Literature
Bio-Tools
Web-Tools
All Tools
Sequence similarity comparison and homology visualization
Syntenic-visualization
B-Dotter
BB-Dotter
ShinyCircos
Ks-Distriplot
JBrowse
Ks-dotplot
Blast
Collinearity generator
Seq-alignment
Blast-dotplot
Diamond
CDS2geno-Dotploting
ParaAT
Inference and analysis of gene synteny
MGA-circos
Paleo-gene_RI
Paleo-gene_RII
Paleo-gene identifier
Correspondence
Kaks calculate
GC-calculation
P-index.calculator
Block_info
CollinearScan
Block_run
NG-KaKs-Cal
MCScanX
KaKs calculator
Genome Mount Rate Calculator
Gene structure and visualization
Hmmer
InterProScan
MEME Suite
Cpgfinder
Gene structure
Pfam
GSDS
CodonW
GF-Circos
Sequence-fetch
DupGen_finder
TransFam identifier
SequenceServer
Phylogenetic and expression analysis of genes
Lollipop
IQ-Tree
Heatmap
FastTree
Draw_list_trees
Subtree-extrator
Species classification
Calculation Tools
BDI-finder
BDI-extractor
BDI-combiner
BDI-deduplicator
SS-extractor
SAF-converter
BBM-extraction
Deal_stars
Block number count
Gene_cds_exon_counter
Blast match
Chromosome length extractor
AGRP-toolkit
Bio-Software
Aster-Stats
Asteraceae Phylogenetic Tree
Gene Duplication Types
N6-methyladenosine
Transposable Elements
Regulatory Proteins
Floral Morphology Regulation
Terpenoid Biosynthesis
Heat Stress
Salt Resistance
Drought Tolerance
Rubber Synthesis Related Families
Inulin Related Family
MGAs of
Euptelea pleiosperma
as reference
MGAs of
Vitis vinifera
as reference
MGAs of
Arctium lappa
as reference
MGAs of
Helianthus annuus
as reference
Submit-Projects
Guides
User manual
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AGRP-Switch
Gene Search
Species
Artemisia annua
Artemisia argyi
Ambrosia artemisiifolia
Ambrosia trifida
Arctium lappa
Arctium minus
Artemisia tridentata
Bidens alba
Carthamus tinctorius
Cynara cardunculus
Centaurea solstitialis
Chrysanthemum lavandulifolium
Chrysanthemum makinoi
Chrysanthemum morifolium
Chrysanthemum nankingense
Cichorium intybus
Cichorium endivia
Chrysanthemum indicum
Cosmos bipinnatus
Centrapalus pauciflorus
Dahlia pinnata
Deinandra increscens subsp. villosa
Erigeron canadensis
Erigeron breviscapus
Flaveria bidentis
Flaveria brownii
Flaveria floridana
Flaveria linearis
Flaveria ramosissima
Flaveria robusta
Flaveria sonorensis
Flaveria trinervia
Glebionis coronaria
Helianthus annuus
Helianthus tuberosus
Helichrysum umbraculigerum
Lactuca saligna
Logfia minima
Lactuca sativa
Mikania micrantha
Pulicaria dysenterica
Pluchea indica
Pseudognaphalium luteoalbum
Saussurea involucrata
Solidago caesia
Senecio squalidus
Smallanthus sonchifolius
Solidago canadensis
Stevia rebaudiana
Tagetes erecta
Taraxacum koksaghyz
Taraxacum mongolicum
Nymphoides indica
Vitis vinifera
Buxus sinica
Tetracentron sinense
Nelumbo nucifera
Euptelea pleiosperma
Gene ID
Example:
Aann9g00954
Or, Query Sequence
Example:
Load Example
IQ-Tree Construction
Phylogenetic Analysis: Maximum Likelihood Tree
Input Parameters
This tool uses
IQ-TREE 2
. Upload an
aligned
sequence file (MSA).
The system will
automatically detect
DNA/Protein sequence type.
Upload Alignment File (MSA)
Download Asteraceae MSA Example (FASTA)
Alignment Format
FASTA
PHYLIP
NEXUS
Substitution Model (-m)
Auto (ModelFinder Plus)
GTR+G (DNA)
HKY+G (DNA)
WAG+G (Protein)
LG+G (Protein)
JTT+G (Protein)
Bootstrap (-B)
Run IQ-TREE & Download
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Auto-detecting type & Running IQ-TREE...
This may take a while.
