AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Hierarchical alignments with the Helianthus annuus genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Asteraceae genomes. We used Helianthus annuus as a reference, and by comparing homologous gene locus maps and Ks values between Helianthus annuus and other Asteraceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes.
  The relevant gene ids can be obtained from the Asteraceae blast and match under the Tools module. This link is Asteraceae blast and match.


Select Hean_1 Cobi_1 Bial_1 Bial_2 Dapi_1 Dapi_2 Hetu_1 Hetu_2 Hetu_3 Amtr_1 Smso_1 Smso_2 Taer_1 Fro_1 Fso_1 Ftr_1 Fra_1 Fli_1 Stre_1 Mimi_1 Hean_2 Cobi_2 Bial_3 Bial_4 Dapi_3 Dapi_4 Hetu_4 Hetu_5 Hetu_6 Amtr_2 Smso_3 Smso_4 Taer_2 Fro_2 Fso_2 Ftr_2 Fra_2 Fli_2 Stre_2 Mimi_2
Hean1g00001 Cobi2g02187 Bial10g01240 Bial22g00833 Dapi4g01786 Dapi20g01725 Hetu1g00002 Hetu2g00001 Hetu3g00003 Amtr12g00143 Smso1g03529 Smso28g00533 . . . . . . Stre1g04231 Mimi16g02043 . . . . . . . . . . . . . . . . . . . .
Hean1g00002 . . . . . . . . . . . . . . . . Fli3g00938 . . . . . . . . . . . . . . . . . . . . . .
Hean1g00003 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Hean1g00004 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Hean1g00005 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Hean1g00006 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Hean1g00007 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Hean1g00008 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Hean1g00009 Cobi2g02194 Bial10g01243 Bial22g00836 Dapi4g01793 Dapi20g01729 Hetu1g00005 Hetu2g00006 Hetu3g00006 Amtr12g00187 Smso1g03532 Smso28g00529 Taer4g02240 Fro14g01203 Fso1g01973 Ftr2g00906 . Fli3g00932 Stre1g04234 Mimi16g02048 . . . . . . . . . . . . . . . . . . . .
Hean1g00010 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
First Previous Page 1 of 7085 Last
Gene_GFF
Select Chromosome Start End Strand Old_gene Gene Num
12 4636574 4638905 - AtrifAMIRv0_Chr12g0718751 Amtr12g00143 143
12 6038376 6039338 + AtrifAMIRv0_Chr12g0719191 Amtr12g00187 187
10 12372143 12374529 + g86929.t1 Bial10g01240 1240
10 12437520 12438347 + g86926.t1 Bial10g01243 1243
22 7943610 7945989 + g147201.t1 Bial22g00833 833
22 8018545 8019387 + g147198.t1 Bial22g00836 836
2 67255269 67257572 - h2tg000016l_1.g5059.t1 Cobi2g02187 2187
2 67652664 67653416 + h2tg000016l_1.g5052.t1 Cobi2g02194 2194
4 113022103 113024737 - h2tg000160l.g57371.t1 Dapi4g01786 1786
4 113694851 113695678 - h2tg000160l.g57378.t1 Dapi4g01793 1793
20 104438372 104440928 + h1tg000033l.g91441.t1 Dapi20g01725 1725
20 104905528 104906379 - h1tg000033l.g91445.t1 Dapi20g01729 1729
3 26150422 26151300 - FliAMIRv0_Chr03g0082011 Fli3g00932 932
3 26328804 26329484 + FliAMIRv0_Chr03g0082071 Fli3g00938 938
14 19450717 19451610 + FroAMIRv0_Chr14g0253571 Fro14g01203 1203
1 58178732 58179604 + FsoAMIRv0_Chr01g0019721 Fso1g01973 1973
2 18217501 18218630 - FtrAMIRv0_Chr02g0037731 Ftr2g00906 906
1 117943 120371 + gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr01g0000001 Hean1g00001 1
1 133413 134899 - gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr01g0000011 Hean1g00002 2
1 133806 134496 + gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr01g0000021 Hean1g00003 3
1 217961 218317 + gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr01g0000041 Hean1g00004 4
1 282986 285111 - gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr01g0000061 Hean1g00005 5
1 285113 287963 - gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr01g0000071 Hean1g00006 6
1 340451 340757 + gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr01g0000081 Hean1g00007 7
1 341976 342478 + gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr01g0000091 Hean1g00008 8
1 356611 357489 + gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr01g0000101 Hean1g00009 9
1 412607 412971 + gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr01g0000121 Hean1g00010 10
1 190940 193850 + >Htub.h1tg002714l.g251.t1 Hetu1g00002 2
1 529255 530139 + >Htub.h1tg002714l.g248.t1 Hetu1g00005 5
2 102126 103982 + >Htub.h1tg004339l.g217.t1 Hetu2g00001 1
2 387040 387927 + >Htub.h1tg004339l.g212.t1 Hetu2g00006 6
3 110066 112409 + >Htub.h1tg000837l.g142.t1 Hetu3g00003 3
3 370710 371684 + >Htub.h1tg000837l.g139.t1 Hetu3g00006 6
16 82022219 82024767 + KAD3338113.1 Mimi16g02043 2043
16 82221104 82222021 + KAD3338118.1 Mimi16g02048 2048
1 119679498 119682270 + KAI3829492.1 Smso1g03529 3529
1 119868693 119869610 + KAI3829495.1 Smso1g03532 3532
28 15750760 15751656 - KAI3682809.1 Smso28g00529 529
28 15995393 15998011 - KAI3682813.1 Smso28g00533 533
1 128039121 128041614 + Streb.1G042310.1 Stre1g04231 4231
1 128178677 128179884 + Streb.1G042340.1 Stre1g04234 4234
4 50209496 50210299 + >KAK1428025.1 Taer4g02240 2240
       
DecoBrowse