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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Hierarchical alignments with the Helianthus annuus genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Asteraceae genomes. We used Helianthus annuus as a reference, and by comparing homologous gene locus maps and Ks values between Helianthus annuus and other Asteraceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes.
  The relevant gene ids can be obtained from the Asteraceae blast and match under the Tools module. This link is Asteraceae blast and match.


Select Hean_1 Cobi_1 Bial_1 Bial_2 Dapi_1 Dapi_2 Hetu_1 Hetu_2 Hetu_3 Amtr_1 Smso_1 Smso_2 Taer_1 Fro_1 Fso_1 Ftr_1 Fra_1 Fli_1 Stre_1 Mimi_1 Hean_2 Cobi_2 Bial_3 Bial_4 Dapi_3 Dapi_4 Hetu_4 Hetu_5 Hetu_6 Amtr_2 Smso_3 Smso_4 Taer_2 Fro_2 Fso_2 Ftr_2 Fra_2 Fli_2 Stre_2 Mimi_2
Hean17g04561 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Hean17g04562 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Hean17g04563 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
First Page 7085 of 7085 Next Last
Gene_GFF
Select Chromosome Start End Strand Old_gene Gene Num
17 195001441 195002254 - gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr17g0831741 Hean17g04561 4561
17 195023863 195024165 - gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr17g0831751 Hean17g04562 4562
17 195035411 195040590 - gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr17g0831761 Hean17g04563 4563
       
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