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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Hierarchical alignments with the Arctium lappa genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Asteraceae genomes. We used Arctium lappa as a reference, and by comparing homologous gene locus maps and Ks values between Arctium lappa and other Asteraceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes.
  The relevant gene ids can be obtained from the Asteraceae blast and match under the Tools module. This link is Asteraceae blast and match.


Select Armi_1 Sain_1 Ceso_1 Cati_1 Ccar_1 Cien_1 Cich_1 Lssa_1 Laca_1 Tako_1 Tamo_1 Pslu_1 Lomi_1 Lomi_2 Enbr_1 Ecan_1 Soca_1 Glco_1 Artr_1 Aary_1 Aary_2 Aann_1 Chma_1 Chmo_1 Chmo_2 Chmo_3 Chla_1 Chna_1 Cind_1 Pdy_1 Cobi_1 Hean_1 Bial_1 Bial_2 Dapi_1 Dapi_2 Hetu_1 Hetu_2 Hetu_3 Amtr_1 Smso_1 Smso_2 Taer_1 Fro_1 Fso_1 Ftr_1 Fra_1 Fli_1 Stre_1 Mimi_1 Cobi_2 Hean_2 Bial_3 Bial_4 Dapi_3 Dapi_4 Hetu_4 Hetu_5 Hetu_6 Amtr_2 Smso_3 Smso_4 Taer_2 Fro_2 Fso_2 Ftr_2 Fra_2 Fli_2 Stre_2 Mimi_2
. . . . . . . . . . . Pslu1g20939 . Lomi2g04268 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Armi1g00001 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Armi1g00003 Sain12g00015 . . . Cien5g03419 Cich4g04715 Lssa7g03675 Laca7g02992 Tako4g03647 Tamo4g02569 Pslu1g20939 Lomi1g00396 Lomi2g04268 . Ecan3g02331 . Glco3g01359 . . . . . . . . . . . Pdy4g00720 . . . . . . . . . . . . . . . . . . . . Cobi4g02933 Hean11g01131 . . . . . Hetu31g01290 Hetu33g01511 . . . . . . . . . . .
. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
. Sain12g00017 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Armi1g00005 . Ceso2g03161 Cati3g00003 . Cien5g03422 Cich4g04717 Lssa7g03676 Laca7g02993 Tako4g03643 Tamo4g02568 Pslu1g20937 Lomi1g00398 Lomi2g04267 Enbr6g02028 Ecan3g02332 Soca5g02267 Glco3g01365 Artr3g11095 . Aary13g03195 Aann4g00917 Chma7g07747 Chmo13g00960 Chmo14g00907 Chmo15g00846 Chla6g05589 Chna2g00810 Cind3g05590 . . . . . . . . . . . . . . . . . . . . . Cobi4g02930 Hean11g01132 . . . . . . . . . . . . . . . . . .
Armi1g00006 . Ceso2g03162 . . . . . . . . Pslu1g20935 Lomi1g00399 Lomi2g04266 Enbr6g02027 Ecan3g02333 Soca5g02265 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Armi1g00007 Sain12g00018 Ceso2g03163 Cati3g00009 . Cien5g03424 Cich4g04721 Lssa7g03679 Laca7g02995 Tako4g03638 . Pslu1g20931 . Lomi2g04265 Enbr6g02019 Ecan3g02335 Soca5g02263 . Artr3g11090 . Aary13g03194 Aann4g00912 Chma7g07744 Chmo13g00963 Chmo14g00910 Chmo15g00849 Chla6g05592 Chna2g00812 Cind3g05584 Pdy4g00725 Cobi6g01426 Hean15g04029 Bial24g02148 Bial12g02288 . . Hetu17g02356 Hetu16g02512 Hetu18g02673 Amtr02g04170 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
. Sain12g00019 Ceso2g03164 Cati3g00010 . Cien5g03425 Cich4g04722 Lssa7g03680 Laca7g02996 Tako4g03637 . Pslu1g20930 . Lomi2g04264 . Ecan3g02338 Soca5g02261 . . . Aary13g03192 Aann4g00911 Chma7g07743 Chmo13g00964 Chmo14g00913 Chmo15g00852 Chla6g05596 Chna2g00813 Cind3g05579 Pdy4g00726 . . . . . . . . . . . . . . . . . . . . Cobi4g02928 Hean11g01135 Bial4g03189 . . . . . . . . . . . . . . . . .
Armi1g00008 Sain12g00020 . Cati3g00014 . Cien5g03428 Cich4g04725 Lssa7g03681 Laca7g02997 Tako4g03636 Tamo4g02565 Pslu1g20929 Lomi1g00400 Lomi2g04262 . Ecan3g02340 . . Artr3g11059 . Aary13g03190 Aann4g00909 . Chmo13g00971 Chmo14g00914 Chmo15g00853 Chla6g05601 Chna2g00816 Cind3g05575 Pdy4g00727 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
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Gene_GFF
Select Chromosome Start End Strand Old_gene Gene Num
4 53834065 53834385 + chr4g0770141 Aann4g00909 909
4 53962376 53964472 + chr4g0770251 Aann4g00911 911
4 53965050 53968969 - chr4g0770261 Aann4g00912 912
4 54016642 54020966 - chr4g0770351 Aann4g00917 917
13 188848964 188853563 + Aargg13g31900.1 Aary13g03190 3190
13 188934446 188936128 + Aargg13g31920.1 Aary13g03192 3192
13 189019264 189020976 - Aargg13g31940.1 Aary13g03194 3194
13 189080832 189083932 + Aargg13g31950.1 Aary13g03195 3195
2 82646150 82647667 + AtrifAMIRv0_Chr02g0137661 Amtr02g04170 4170
1 33740 69679 + AmiAMIRv0_Chr01g0000011 Armi1g00001 1
1 171771 172576 + AmiAMIRv0_Chr01g0000031 Armi1g00003 3
1 208751 210426 + AmiAMIRv0_Chr01g0000051 Armi1g00005 5
1 210748 213392 - AmiAMIRv0_Chr01g0000061 Armi1g00006 6
1 231070 232124 + AmiAMIRv0_Chr01g0000071 Armi1g00007 7
1 234858 236564 - AmiAMIRv0_Chr01g0000081 Armi1g00008 8
3 372368017 372369594 + AtridAMIRv0_Chr03g0417951 Artr3g11059 11059
3 373637408 373638988 - AtridAMIRv0_Chr03g0418261 Artr3g11090 11090
3 373698707 373701962 - AtridAMIRv0_Chr03g0418311 Artr3g11095 11095
4 72950285 72953446 + g43028.t1 Bial4g03189 3189
12 53190864 53192472 - g35487.t1 Bial12g02288 2288
24 52048721 52050420 - g67814.t1 Bial24g02148 2148
3 123763 125690 + CtAH03T0000300.1 Cati3g00003 3
3 128834 132406 + CtAH03T0000500.1 Cati3g00009 9
3 129994 132406 - CtAH03T0000600.1 Cati3g00010 10
3 134513 136135 - CtAH03T0000700.1 Cati3g00014 14
2 80269754 80271625 + >KAJ9562628.1 Ceso2g03161 3161
2 80272019 80274731 - >KAJ9562632.1 Ceso2g03162 3162
2 80278695 80279770 + >KAJ9562629.1 Ceso2g03163 3163
2 80279884 80281847 - >KAJ9562630.1 Ceso2g03164 3164
6 221185352 221188461 + ClaG1_Chr06g0428361 Chla6g05589 5589
6 221235532 221237141 + ClaG1_Chr06g0428391 Chla6g05592 5592
6 221426661 221427002 - ClaG1_Chr06g0428431 Chla6g05596 5596
6 221830738 221835231 - ClaG1_Chr06g0428481 Chla6g05601 5601
7 264947669 264949376 + CmaNakai_Chr07g0700451 Chma7g07743 7743
7 264992620 264995422 - CmaNakai_Chr07g0700461 Chma7g07744 7744
7 265044955 265048190 - CmaNakai_Chr07g0700491 Chma7g07747 7747
13 50173997 50177333 + evm.model.scaffold_191.240 Chmo13g00960 960
13 50220915 50227280 + evm.model.scaffold_191.246 Chmo13g00963 963
13 50227113 50229717 - evm.model.scaffold_191.247 Chmo13g00964 964
13 51093750 51098074 - evm.model.scaffold_191.276 Chmo13g00971 971
14 44830483 44833652 + evm.model.scaffold_25.229 Chmo14g00907 907
14 44888223 44891097 + evm.model.scaffold_25.224 Chmo14g00910 910
14 44951466 44953397 - evm.model.scaffold_25.220 Chmo14g00913 913
14 45185838 45190085 - evm.model.scaffold_25.213 Chmo14g00914 914
15 48759327 48762810 + evm.model.scaffold_1806.367 Chmo15g00846 846
15 48796717 48799732 + evm.model.scaffold_1806.364 Chmo15g00849 849
15 48855040 48856971 - evm.model.scaffold_1806.359 Chmo15g00852 852
15 49126286 49130618 - evm.model.scaffold_25.148 Chmo15g00853 853
2 61898425 61902277 + Cn0025760 Chna2g00810 810
2 61976874 61979779 + Cn0025740 Chna2g00812 812
2 61982286 61983995 - Cn0025730 Chna2g00813 813
2 62226223 62227803 - Cn0025670 Chna2g00816 816
4 135545208 135546050 + KAI3753850.1 Cich4g04715 4715
4 135564748 135566059 + KAI3753852.1 Cich4g04717 4717
4 135598459 135600834 + KAI3753856.1 Cich4g04721 4721
4 135621164 135622826 - KAI3753857.1 Cich4g04722 4722
4 135661229 135662440 - KAI3753860.1 Cich4g04725 4725
5 80188653 80189506 + KAI3509939.1 Cien5g03419 3419
5 80208974 80210264 + KAI3509942.1 Cien5g03422 3422
5 80233161 80235077 + KAI3509944.1 Cien5g03424 3424
5 80252303 80253965 - KAI3509945.1 Cien5g03425 3425
5 80283126 80284337 - KAI3509948.1 Cien5g03428 3428
3 318583842 318585422 + D.indicum_Contig84_G00007.t1 Cind3g05575 5575
3 318879644 318881596 + D.indicum_Contig84_G00011.t1 Cind3g05579 5579
3 319136524 319139212 - D.indicum_Contig84_G00016.t1 Cind3g05584 5584
3 319195590 319197278 - D.indicum_Contig84_G00022.t1 Cind3g05590 5590
4 77892360 77893472 + h2tg000009l_1.g42351.t1 Cobi4g02928 2928
4 77912908 77916228 - h2tg000009l_1.g42349.t1 Cobi4g02930 2930
4 77963940 77964883 - h2tg000009l_1.g42346.t1 Cobi4g02933 2933
6 11546278 11549074 + h2tg000021l_1.g11250.t1 Cobi6g01426 1426
3 33989783 33991053 + XM_043765819.1 Ecan3g02331 2331
3 34002374 34004956 + XM_043765043.1 Ecan3g02332 2332
3 34005728 34010101 - XM_043763483.1 Ecan3g02333 2333
3 34017040 34019344 + XM_043763485.1 Ecan3g02335 2335
3 34028759 34030880 - XM_043766616.1 Ecan3g02338 2338
3 34045475 34048637 - XM_043765094.1 Ecan3g02340 2340
6 72174191 72177599 - evm.model.ctg85.5 Enbr6g02019 2019
6 72319489 72325978 + evm.model.ctg85.21 Enbr6g02027 2027
6 72327130 72330067 - evm.model.ctg85.22 Enbr6g02028 2028
3 86998384 86999426 + GcoAMIRv0_Chr03g0169881 Glco3g01359 1359
3 87488735 87492491 + GcoAMIRv0_Chr03g0169941 Glco3g01365 1365
11 30174588 30176028 + gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr11g0479051 Hean11g01131 1131
11 30396985 30399666 + gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr11g0479071 Hean11g01132 1132
11 30526700 30527785 - gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr11g0479101 Hean11g01135 1135
15 157413949 157416542 + gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr15g0717621 Hean15g04029 4029
16 131759007 131764585 - >Htub.h1tg000461l.g320.t1 Hetu16g02512 2512
17 123111346 123112821 - >Htub.h1tg000611l.g202.t1 Hetu17g02356 2356
18 132339620 132340529 - >Htub.h2tg002176l.g302.t1 Hetu18g02673 2673
31 62150494 62152110 + >Htub.h1tg001060l.g178.t1 Hetu31g01290 1290
33 74627929 74631160 + >Htub.h1tg001347l.g456.t1 Hetu33g01511 1511
7 143418728 143419684 + CAI9295186.1 Laca7g02992 2992
7 143427536 143429845 + CAI9295187.1 Laca7g02993 2993
7 143525757 143529188 + CAI9295189.1 Laca7g02995 2995
7 143529132 143531080 - CAI9295190.1 Laca7g02996 2996
7 143543212 143544654 - CAI9295191.1 Laca7g02997 2997
1 3594095 3594834 - LmiAMIRv0_Chr01g0003961 Lomi1g00396 396
1 3602490 3605036 + LmiAMIRv0_Chr01g0003981 Lomi1g00398 398
1 3605477 3609211 - LmiAMIRv0_Chr01g0003991 Lomi1g00399 399
1 3618276 3619886 - LmiAMIRv0_Chr01g0004001 Lomi1g00400 400
2 47998936 48000522 + LmiAMIRv0_Chr02g0087951 Lomi2g04262 4262
2 48018772 48020560 + LmiAMIRv0_Chr02g0087971 Lomi2g04264 4264
2 48021200 48022758 - LmiAMIRv0_Chr02g0087981 Lomi2g04265 4265
2 48035587 48039285 + LmiAMIRv0_Chr02g0087991 Lomi2g04266 4266
2 48039986 48042364 - LmiAMIRv0_Chr02g0088001 Lomi2g04267 4267
2 48049616 48050532 + LmiAMIRv0_Chr02g0088011 Lomi2g04268 4268
7 194824243 194825282 + >KAJ0196075.1 Lssa7g03675 3675
7 194878649 194880469 + >KAJ0198587.1 Lssa7g03676 3676
7 194974749 194976781 + >KAJ0194872.1 Lssa7g03679 3679
7 194976778 194978533 - >KAJ0197992.1 Lssa7g03680 3680
7 195002699 195004141 - >KAJ0194788.1 Lssa7g03681 3681
4 13201650 13202566 + PdyAMIRv0_Chr04g0155271 Pdy4g00720 720
4 13284090 13285423 + PdyAMIRv0_Chr04g0155321 Pdy4g00725 725
4 13285805 13290142 - PdyAMIRv0_Chr04g0155331 Pdy4g00726 726
4 13317896 13319470 - PdyAMIRv0_Chr04g0155341 Pdy4g00727 727
1 150757060 150758658 + PluAMIRv0_Chr01g0208371 Pslu1g20929 20929
1 150772813 150774651 + PluAMIRv0_Chr01g0208381 Pslu1g20930 20930
1 150775277 150776796 - PluAMIRv0_Chr01g0208391 Pslu1g20931 20931
1 150796060 150797107 + PluAMIRv0_Chr01g0208431 Pslu1g20935 20935
1 150800214 150802769 - PluAMIRv0_Chr01g0208451 Pslu1g20937 20937
1 150830753 150831558 + PluAMIRv0_Chr01g0208471 Pslu1g20939 20939
12 66893 67857 - SinAMIRv0_Chr12g0355801 Sain12g00015 15
12 111889 113335 + SinAMIRv0_Chr12g0355821 Sain12g00017 17
12 141226 142340 + SinAMIRv0_Chr12g0355831 Sain12g00018 18
12 142441 145069 - SinAMIRv0_Chr12g0355841 Sain12g00019 19
12 145314 146972 - SinAMIRv0_Chr12g0355851 Sain12g00020 20
5 24156881 24158748 + augustus16517.t01 Soca5g02261 2261
5 24162886 24165981 - transfrag10951.t01 Soca5g02263 2263
5 24174154 24178888 + transfrag10952.t03 Soca5g02265 2265
5 24179852 24182975 - augustus16522.t03 Soca5g02267 2267
4 80916218 80918901 + TkA04G320300.1 Tako4g03636 3636
4 80919749 80922156 + TkA04G320310.1 Tako4g03637 3637
4 80934413 80936263 + TkA04G320400.1 Tako4g03638 3638
4 80946384 80948523 - TkA04G320450.3 Tako4g03643 3643
4 81079412 81080818 - TkA04G320920.1 Tako4g03647 3647
4 47677945 47680692 + TbA04G037060.1 Tamo4g02565 2565
4 47746676 47748362 - TbA04G037010.1 Tamo4g02568 2568
4 47764861 47766641 - TbA04G037000.1 Tamo4g02569 2569
       
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