AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Hierarchical alignments with the Arctium lappa genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Asteraceae genomes. We used Arctium lappa as a reference, and by comparing homologous gene locus maps and Ks values between Arctium lappa and other Asteraceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes.
  The relevant gene ids can be obtained from the Asteraceae blast and match under the Tools module. This link is Asteraceae blast and match.


Select Armi_1 Sain_1 Ceso_1 Cati_1 Ccar_1 Cien_1 Cich_1 Lssa_1 Laca_1 Tako_1 Tamo_1 Pslu_1 Lomi_1 Lomi_2 Enbr_1 Ecan_1 Soca_1 Glco_1 Artr_1 Aary_1 Aary_2 Aann_1 Chma_1 Chmo_1 Chmo_2 Chmo_3 Chla_1 Chna_1 Cind_1 Pdy_1 Cobi_1 Hean_1 Bial_1 Bial_2 Dapi_1 Dapi_2 Hetu_1 Hetu_2 Hetu_3 Amtr_1 Smso_1 Smso_2 Taer_1 Fro_1 Fso_1 Ftr_1 Fra_1 Fli_1 Stre_1 Mimi_1 Cobi_2 Hean_2 Bial_3 Bial_4 Dapi_3 Dapi_4 Hetu_4 Hetu_5 Hetu_6 Amtr_2 Smso_3 Smso_4 Taer_2 Fro_2 Fso_2 Ftr_2 Fra_2 Fli_2 Stre_2 Mimi_2
Armi1g00010 Sain12g00021 Ceso2g03165 Cati3g00015 . . . Lssa7g03686 . Tako4g03631 Tamo4g02554 Pslu1g20925 . . . . . Glco3g01367 Artr3g11048 . Aary13g03188 Aann4g00906 Chma7g07729 Chmo13g00982 Chmo14g00919 . Chla6g05612 Chna2g00824 Cind3g05571 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Armi1g00012 Sain12g00022 . . . Cien5g03431 Cich4g04728 Lssa7g03688 . Tako4g03607 Tamo4g02542 Pslu1g20924 Lomi1g00402 Lomi2g04260 . Ecan3g02344 . Glco3g01368 Artr3g11047 . Aary13g03187 Aann4g00904 Chma7g07727 Chmo13g00983 Chmo14g00921 Chmo15g00859 Chla6g05613 Chna2g00825 Cind3g05569 Pdy4g00733 . . . . . . . . . . . . . . . . . . . . Cobi4g02921 Hean11g01142 Bial4g03182 Bial16g02584 . . . . . Amtr02g06687 . . . . . . . . . .
. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
. . . . . . . . . . . . . . . . . . . . . . Chma7g03295 Chmo13g00984 Chmo14g00922 Chmo15g00861 Chla6g05614 Chna2g00827 Cind3g02170 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Armi1g00014 Sain12g00024 . Cati3g00018 . Cien5g03433 Cich4g04731 Lssa7g03696 Laca7g03004 Tako4g03603 Tamo4g02539 Pslu1g20922 Lomi1g00404 Lomi2g04258 . Ecan3g02346 Soca5g02255 Glco3g01370 Artr3g11035 . Aary13g03185 Aann4g00900 . Chmo13g00985 Chmo14g00923 Chmo15g00862 Chla6g05615 Chna2g00828 Cind3g02169 . . . . . . . . . . . . . . . . . . . . . Cobi4g02919 Hean11g01145 Bial4g03179 Bial16g02582 . . . . . Amtr02g06677 . . . . . . . . . .
Armi1g00015 Sain12g00025 Ceso2g03168 Cati3g00021 Ccar2g02193 Cien5g03434 Cich4g04732 Lssa7g03697 Laca7g03005 Tako4g03602 . Pslu1g20921 . Lomi2g04257 . Ecan3g02347 Soca5g02254 Glco3g01371 Artr3g11034 . Aary13g03184 Aann4g00899 Chma7g07720 Chmo13g00986 Chmo14g00925 Chmo15g00863 Chla6g05616 Chna2g00829 Cind3g02168 Pdy4g00736 . . . . . . . . . . . . . . . . . . . . Cobi4g02918 Hean11g01146 Bial4g03178 Bial16g02581 . . . . . Amtr02g06676 . . . . . . . . . .
Armi1g00016 . . . . Cien5g03437 Cich4g04734 Lssa7g03698 . Tako4g03601 Tamo4g02538 Pslu1g20917 . Lomi2g04256 . Ecan3g02348 Soca5g02253 Glco3g01372 . . . Aann4g00898 . Chmo13g00988 Chmo14g00928 . . Chna2g00831 Cind3g02164 Pdy4g00744 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Armi1g00017 Sain12g00027 Ceso2g03169 Cati3g00023 . Cien5g03440 Cich4g04738 Lssa7g03699 Laca7g03008 Tako4g03597 Tamo4g02535 Pslu1g20916 Lomi1g00406 Lomi2g04255 . Ecan3g02350 Soca5g02250 Glco3g01373 . . . Aann4g00897 Chma7g07717 Chmo13g00989 Chmo14g00929 Chmo15g00866 Chla6g05619 Chna2g00833 Cind3g02161 Pdy4g00747 . . . . . . . . . . . . . . . . . . . . Cobi4g02906 Hean11g01152 Bial4g03171 Bial16g02569 . . . . . Amtr02g06674 . . . . . . . . . .
Armi1g00018 Sain12g00028 Ceso2g03170 Cati3g00026 . Cien5g03441 Cich4g04739 Lssa7g03700 Laca7g03009 Tako4g03596 Tamo4g02534 Pslu1g20915 Lomi1g00407 . . Ecan3g02351 Soca5g02249 Glco3g01374 . . . Aann4g00896 Chma7g07716 Chmo13g00990 Chmo14g00930 Chmo15g00867 Chla6g05620 Chna2g00834 Cind3g02160 Pdy4g00748 . Hean15g04033 . . . . Hetu17g02349 . Hetu18g02664 Amtr02g04176 . . . . . . . . . . Cobi4g02905 Hean11g01153 Bial4g03170 Bial16g02568 . . . . . Amtr02g06673 . . . . . . . . . .
   
Gene_GFF
Select Chromosome Start End Strand Old_gene Gene Num
4 53108018 53112345 + chr4g0769511 Aann4g00896 896
4 53115316 53126479 - chr4g0769521 Aann4g00897 897
4 53325521 53330144 - chr4g0769641 Aann4g00898 898
4 53545182 53548317 + chr4g0769881 Aann4g00899 899
4 53548454 53551298 - chr4g0769891 Aann4g00900 900
4 53624781 53626727 - chr4g0770011 Aann4g00904 904
4 53632809 53639413 + chr4g0770031 Aann4g00906 906
13 188657154 188660928 + Aargg13g31840.1 Aary13g03184 3184
13 188661349 188663247 - Aargg13g31850.1 Aary13g03185 3185
13 188733995 188735261 - Aargg13g31870.1 Aary13g03187 3187
13 188740899 188746308 + Aargg13g31880.1 Aary13g03188 3188
2 82736460 82741822 - AtrifAMIRv0_Chr02g0137721 Amtr02g04176 4176
2 120450257 120456427 + AtrifAMIRv0_Chr02g0162691 Amtr02g06673 6673
2 120457669 120468527 - AtrifAMIRv0_Chr02g0162701 Amtr02g06674 6674
2 120576967 120579308 + AtrifAMIRv0_Chr02g0162721 Amtr02g06676 6676
2 120580245 120582213 - AtrifAMIRv0_Chr02g0162731 Amtr02g06677 6677
2 120681871 120682542 - AtrifAMIRv0_Chr02g0162831 Amtr02g06687 6687
1 246559 251416 - AmiAMIRv0_Chr01g0000101 Armi1g00010 10
1 254280 255162 + AmiAMIRv0_Chr01g0000121 Armi1g00012 12
1 287658 289648 + AmiAMIRv0_Chr01g0000141 Armi1g00014 14
1 290290 292361 - AmiAMIRv0_Chr01g0000151 Armi1g00015 15
1 295069 297954 + AmiAMIRv0_Chr01g0000161 Armi1g00016 16
1 321210 331371 + AmiAMIRv0_Chr01g0000171 Armi1g00017 17
1 332194 336040 - AmiAMIRv0_Chr01g0000181 Armi1g00018 18
3 371748634 371751451 + AtridAMIRv0_Chr03g0417701 Artr3g11034 11034
3 371752078 371754066 - AtridAMIRv0_Chr03g0417711 Artr3g11035 11035
3 371965344 371967499 - AtridAMIRv0_Chr03g0417831 Artr3g11047 11047
3 372014544 372019763 + AtridAMIRv0_Chr03g0417841 Artr3g11048 11048
4 72512139 72516645 + g43009.t1 Bial4g03170 3170
4 72517489 72527676 - g43010.t1 Bial4g03171 3171
4 72772929 72775064 + g43017.t1 Bial4g03178 3178
4 72776216 72779965 - g43018.t1 Bial4g03179 3179
4 72806430 72807407 - g43021.t1 Bial4g03182 3182
16 66388812 66393972 + g150014.t1 Bial16g02568 2568
16 66394813 66404221 - g150013.t1 Bial16g02569 2569
16 66673644 66675786 + g150001.t1 Bial16g02581 2581
16 66676964 66680152 - g150000.t1 Bial16g02582 2582
16 66720216 66721216 - g149998.t1 Bial16g02584 2584
3 147466 164838 - CtAH03T0000800.1 Cati3g00015 15
3 166643 182956 + CtAH03T0001000.1 Cati3g00018 18
3 168478 170545 - CtAH03T0001100.1 Cati3g00021 21
3 169597 183753 + CtAH03T0001000.3 Cati3g00023 23
3 181662 188388 - CtAH03T0001200.1 Cati3g00026 26
2 69100990 69103072 + gnl|WGS:LEKV|Ccrd_011244.mRNA.1_mrna Ccar2g02193 2193
2 80295809 80299913 - >KAJ9562802.1 Ceso2g03165 3165
2 80338320 80340367 - >KAJ9562803.1 Ceso2g03168 3168
2 80347495 80356854 + >KAJ9562799.1 Ceso2g03169 3169
2 80357464 80360521 - >KAJ9562804.1 Ceso2g03170 3170
6 222554745 222559925 - ClaG1_Chr06g0428591 Chla6g05612 5612
6 222665100 222666286 + ClaG1_Chr06g0428601 Chla6g05613 5613
6 222782057 222788825 + ClaG1_Chr06g0428611 Chla6g05614 5614
6 222789889 222791765 + ClaG1_Chr06g0428621 Chla6g05615 5615
6 222792365 222793110 - ClaG1_Chr06g0428631 Chla6g05616 5616
6 222907013 222917128 + ClaG1_Chr06g0428661 Chla6g05619 5619
6 222919032 222926431 - ClaG1_Chr06g0428671 Chla6g05620 5620
7 87147692 87149899 - CmaNakai_Chr07g0655971 Chma7g03295 3295
7 264041094 264048817 + CmaNakai_Chr07g0700181 Chma7g07716 7716
7 264051351 264061485 - CmaNakai_Chr07g0700191 Chma7g07717 7717
7 264112537 264114829 - CmaNakai_Chr07g0700221 Chma7g07720 7720
7 264442823 264443050 - CmaNakai_Chr07g0700291 Chma7g07727 7727
7 264456024 264459510 + CmaNakai_Chr07g0700311 Chma7g07729 7729
13 51545013 51550208 - evm.model.scaffold_1389.65 Chmo13g00982 982
13 51644172 51645422 + evm.model.scaffold_1389.64 Chmo13g00983 983
13 51724489 51731585 + evm.model.scaffold_1389.60 Chmo13g00984 984
13 51733748 51735344 + evm.model.scaffold_1389.59 Chmo13g00985 985
13 51735759 51738576 - evm.model.scaffold_1389.58 Chmo13g00986 986
13 51802702 51805727 + evm.model.scaffold_1389.47 Chmo13g00988 988
13 51914096 51924519 + evm.model.scaffold_1389.45 Chmo13g00989 989
13 51926643 51935375 - evm.model.scaffold_1389.44 Chmo13g00990 990
14 45550444 45555656 - evm.model.scaffold_25.193 Chmo14g00919 919
14 45636658 45638004 + evm.model.scaffold_25.190.2 Chmo14g00921 921
14 45858886 45866926 + evm.model.scaffold_25.187 Chmo14g00922 922
14 45867554 45869674 + evm.model.scaffold_25.186 Chmo14g00923 923
14 45871195 45876446 - evm.model.scaffold_25.184 Chmo14g00925 925
14 46144980 46150430 + evm.model.scaffold_25.176 Chmo14g00928 928
14 46349973 46360747 + evm.model.scaffold_25.164 Chmo14g00929 929
14 46362536 46370696 - evm.model.scaffold_25.163 Chmo14g00930 930
15 49573419 49574767 + evm.model.scaffold_25.124.2 Chmo15g00859 859
15 49662736 49671254 + evm.model.scaffold_25.119 Chmo15g00861 861
15 49671564 49673527 + evm.model.scaffold_25.118 Chmo15g00862 862
15 49673998 49676762 - evm.model.scaffold_25.117 Chmo15g00863 863
15 49901572 49911349 + evm.model.scaffold_25.109 Chmo15g00866 866
15 49913868 49922085 - evm.model.scaffold_25.108 Chmo15g00867 867
2 63837249 63842429 - Cn0230120 Chna2g00824 824
2 64022869 64024540 + Cn0230110 Chna2g00825 825
2 64157885 64159763 + Cn0230070 Chna2g00827 827
2 64160082 64162405 + Cn0230060 Chna2g00828 828
2 64162750 64165469 - Cn0230050 Chna2g00829 829
2 64252156 64255041 + Cn0230030 Chna2g00831 831
2 64326324 64336907 + Cn0230010 Chna2g00833 833
2 64341368 64349525 - Cn0230000 Chna2g00834 834
4 135723172 135724536 + KAI3753863.1 Cich4g04728 4728
4 135775794 135777363 + KAI3753866.1 Cich4g04731 4731
4 135777670 135779969 - KAI3753867.1 Cich4g04732 4732
4 135798395 135799159 - KAI3753869.1 Cich4g04734 4734
4 135874064 135880969 + KAI3753873.1 Cich4g04738 4738
4 135883067 135885469 - KAI3753874.1 Cich4g04739 4739
5 80340929 80342260 + KAI3509951.1 Cien5g03431 3431
5 80378262 80379804 + KAI3509953.1 Cien5g03433 3433
5 80380101 80382433 - KAI3509954.1 Cien5g03434 3434
5 80431305 80434178 - KAI3509957.1 Cien5g03437 3437
5 80462031 80469103 + KAI3509960.1 Cien5g03440 3440
5 80470209 80472589 - KAI3509961.1 Cien5g03441 3441
3 317040261 317045734 + D.indicum_Contig21_G00204.t1 Cind3g02160 2160
3 317048234 317058365 - D.indicum_Contig21_G00205.t1 Cind3g02161 2161
3 317107164 317108030 - D.indicum_Contig21_G00208.t1 Cind3g02164 2164
3 317247348 317249821 + D.indicum_Contig21_G00212.t1 Cind3g02168 2168
3 317250423 317252368 - D.indicum_Contig21_G00213.t1 Cind3g02169 2169
3 317253221 317260338 - D.indicum_Contig21_G00214.t1 Cind3g02170 2170
3 318037130 318043890 - D.indicum_Contig84_G00001.t1 Cind3g05569 5569
3 318135627 318137678 + D.indicum_Contig84_G00003.t1 Cind3g05571 5571
4 77542578 77550358 + h2tg000009l_1.g42374.t1 Cobi4g02905 2905
4 77552125 77560932 - h2tg000009l_1.g42373.t1 Cobi4g02906 2906
4 77763279 77765405 + h2tg000009l_1.g42361.t1 Cobi4g02918 2918
4 77766429 77769694 - h2tg000009l_1.g42360.t1 Cobi4g02919 2919
4 77790219 77791949 - h2tg000009l_1.g42358.t1 Cobi4g02921 2921
3 34070858 34071970 + XM_043765992.1 Ecan3g02344 2344
3 34102677 34105094 + XM_043764687.1 Ecan3g02346 2346
3 34105367 34108378 - XM_043764686.1 Ecan3g02347 2347
3 34114016 34116898 + XM_043764191.1 Ecan3g02348 2348
3 34120493 34131539 + XM_043764555.1 Ecan3g02350 2350
3 34131735 34136714 - XM_043764132.1 Ecan3g02351 2351
3 87580581 87586295 - GcoAMIRv0_Chr03g0169961 Glco3g01367 1367
3 87668070 87668860 + GcoAMIRv0_Chr03g0169971 Glco3g01368 1368
3 87947388 87949730 + GcoAMIRv0_Chr03g0169991 Glco3g01370 1370
3 87950288 87952970 - GcoAMIRv0_Chr03g0170001 Glco3g01371 1371
3 87989751 87992630 + GcoAMIRv0_Chr03g0170011 Glco3g01372 1372
3 88012030 88022743 + GcoAMIRv0_Chr03g0170021 Glco3g01373 1373
3 88023972 88028793 - GcoAMIRv0_Chr03g0170031 Glco3g01374 1374
11 30710689 30712490 + gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr11g0479171 Hean11g01142 1142
11 30915853 30919260 + gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr11g0479211 Hean11g01145 1145
11 30918540 30922319 - gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr11g0479221 Hean11g01146 1146
11 31192538 31203915 + gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr11g0479281 Hean11g01152 1152
11 31203617 31212943 - gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr11g0479291 Hean11g01153 1153
15 157919702 157925782 - gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr15g0717671 Hean15g04033 4033
17 122642790 122652491 + >Htub.h1tg000611l.g209.t1 Hetu17g02349 2349
18 131871066 131880767 + >Htub.h2tg002176l.g293.t1 Hetu18g02664 2664
7 143831782 143832700 + CAI9295200.1 Laca7g03004 3004
7 143832985 143839977 - CAI9295201.1 Laca7g03005 3005
7 143884908 143893265 + CAI9295204.1 Laca7g03008 3008
7 143896872 143899755 - CAI9295205.1 Laca7g03009 3009
1 3635925 3637370 + LmiAMIRv0_Chr01g0004021 Lomi1g00402 402
1 3657652 3659597 + LmiAMIRv0_Chr01g0004041 Lomi1g00404 404
1 3683280 3693432 + LmiAMIRv0_Chr01g0004061 Lomi1g00406 406
1 3694234 3698746 - LmiAMIRv0_Chr01g0004071 Lomi1g00407 407
2 47909334 47918830 - LmiAMIRv0_Chr02g0087881 Lomi2g04255 4255
2 47921618 47924506 - LmiAMIRv0_Chr02g0087891 Lomi2g04256 4256
2 47941926 47944435 + LmiAMIRv0_Chr02g0087901 Lomi2g04257 4257
2 47945096 47947226 - LmiAMIRv0_Chr02g0087911 Lomi2g04258 4258
2 47970367 47971951 - LmiAMIRv0_Chr02g0087931 Lomi2g04260 4260
7 195495991 195500062 - >KAJ0198357.1 Lssa7g03686 3686
7 195507452 195508251 + >KAJ0195392.1 Lssa7g03688 3688
7 195723530 195725371 + >KAJ0194776.1 Lssa7g03696 3696
7 195725385 195728251 - >KAJ0197304.1 Lssa7g03697 3697
7 195731960 195734872 - >KAJ0196141.1 Lssa7g03698 3698
7 195780187 195788971 + >KAJ0195245.1 Lssa7g03699 3699
7 195790770 195793488 - >KAJ0196913.1 Lssa7g03700 3700
4 13368529 13369251 + PdyAMIRv0_Chr04g0155401 Pdy4g00733 733
4 13401221 13403534 - PdyAMIRv0_Chr04g0155431 Pdy4g00736 736
4 13591153 13594047 + PdyAMIRv0_Chr04g0155511 Pdy4g00744 744
4 13618395 13627115 + PdyAMIRv0_Chr04g0155541 Pdy4g00747 747
4 13628521 13633644 - PdyAMIRv0_Chr04g0155551 Pdy4g00748 748
1 150649002 150652949 + PluAMIRv0_Chr01g0208231 Pslu1g20915 20915
1 150653767 150664437 - PluAMIRv0_Chr01g0208241 Pslu1g20916 20916
1 150667087 150669975 - PluAMIRv0_Chr01g0208251 Pslu1g20917 20917
1 150697282 150699787 + PluAMIRv0_Chr01g0208291 Pslu1g20921 20921
1 150700448 150702352 - PluAMIRv0_Chr01g0208301 Pslu1g20922 20922
1 150726724 150728053 - PluAMIRv0_Chr01g0208321 Pslu1g20924 20924
1 150729573 150734146 + PluAMIRv0_Chr01g0208331 Pslu1g20925 20925
12 179797 183794 - SinAMIRv0_Chr12g0355861 Sain12g00021 21
12 195268 195958 + SinAMIRv0_Chr12g0355871 Sain12g00022 22
12 267838 269111 + SinAMIRv0_Chr12g0355891 Sain12g00024 24
12 269416 271523 - SinAMIRv0_Chr12g0355901 Sain12g00025 25
12 291190 300728 + SinAMIRv0_Chr12g0355921 Sain12g00027 27
12 302650 307509 - SinAMIRv0_Chr12g0355931 Sain12g00028 28
5 23968742 23974003 + transfrag10939.t01 Soca5g02249 2249
5 23975903 23988748 - transfrag10940.t01 Soca5g02250 2250
5 24027666 24030548 - genewise14154.t01 Soca5g02253 2253
5 24046304 24049466 + asmbl_1968.p1 Soca5g02254 2254
5 24049786 24052737 - transfrag10942.t01 Soca5g02255 2255
4 79267275 79269879 + TkA04G314550.1 Tako4g03596 3596
4 79269904 79278193 - TkA04G314560.1 Tako4g03597 3597
4 79299290 79301722 + TkA04G314630.1 Tako4g03601 3601
4 79303871 79307068 + TkA04G314640.1 Tako4g03602 3602
4 79307113 79309082 - TkA04G314650.1 Tako4g03603 3603
4 79456330 79458786 - TkA04G315220.2 Tako4g03607 3607
4 80713208 80719167 + TkA04G319560.1 Tako4g03631 3631
4 46909663 46912197 + TbA04G038060.1 Tamo4g02534 2534
4 46912209 46920083 - TbA04G038050.1 Tamo4g02535 2535
4 46948580 46951468 + TbA04G038010.1 Tamo4g02538 2538
4 46957662 46959048 - TbA04G038000.1 Tamo4g02539 2539
4 47073518 47076135 - TbA04G037860.1 Tamo4g02542 2542
4 47386341 47392147 + TbA04G037470.1 Tamo4g02554 2554
       
DecoBrowse