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Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Aster-Orthologous

  Genes that are duplicated as concomitant events of species formation and continue to have the same function are called orthologous genes. New gene functions can be caused by duplications that occur within the genome of a single species. Duplications within a genome result in paralogous gene.
  Orthogroups, orthologs and paralogs genes were identified using OrthoFinder (v2.5.1). First, the similarity relationship between protein sequences of all species was based on the Blastp similarity score (E-value 1e-5). The sequence alignment program was blast_gz and the conformational tree method was FastTree. MCL graph clustering algorithm (Inflation value >1.5) was used for cluster analysis to obtain single-copy and multi-copy gene families.
10 orthogroups on this page
Orthogroup Total Tree Image Download Aann Aary Amar Amtr Arla Armi Artr Bial Busi Cati Ccar Ceso Chla Chma Chmo Chna Cich Cien Cind Cobi Cpa Dapi Desu Ecan Enbr Eupl Fbi Fbr Ffl Fli Fra Fro Fso Ftr Glco Hean Hetu Heub Laca Lasa Lomi Lssa Mimi Nenu Nin Pdy Pin Pslu Sain Scae Sesq Smso Soca Stre Taer Tako Tamo Tesi Vivi
OG0000000 17557 Version not verified Version not verified Version not verified 54 327 0 599 5 483 1084 291 9 84 2 498 149 10 40 4 187 55 49 484 148 729 118 152 3 0 1 572 499 277 525 206 639 689 467 268 1323 4 2 4 154 86 795 0 23 270 1280 875 509 570 537 657 90 256 184 92 138 0 1
OG0000001 14122 Version not verified Version not verified Version not verified 131 117 6 2065 34 302 697 184 60 146 10 219 412 119 64 27 22 22 171 109 66 69 74 101 4 41 5 510 724 586 81 75 104 104 499 130 136 29 47 50 160 290 97 5 0 275 463 778 384 1592 213 59 327 71 126 323 601 2 4
OG0000002 10312 Version not verified Version not verified Version not verified 57 40 1 939 1 187 738 212 3 5 0 139 90 7 5 17 51 9 15 475 67 344 105 91 7 2 0 202 487 255 94 9 50 116 609 62 1147 4 4 4 17 116 98 0 59 136 228 998 139 779 494 92 153 198 57 25 70 2 1
OG0000003 8218 Version not verified Version not verified Version not verified 68 265 0 366 1 282 253 148 0 8 0 269 78 2 2 1 76 44 42 381 80 293 55 75 1 0 2 309 490 308 78 52 245 115 48 34 396 1 2 2 26 85 225 0 79 196 814 878 304 152 141 139 13 162 87 24 21 0 0
OG0000004 7337 Version not verified Version not verified Version not verified 22 101 0 104 0 217 213 119 2 5 0 187 34 0 0 2 87 82 0 154 17 225 35 27 1 1 2 34 19 74 132 227 332 718 91 40 304 0 3 3 230 120 138 0 3 246 1190 431 229 183 356 162 83 101 52 77 122 0 0
OG0000005 5607 Version not verified Version not verified Version not verified 59 85 6 249 1 77 995 33 52 103 8 66 149 30 16 7 22 11 20 44 50 41 110 123 5 1 3 109 237 236 51 45 72 76 455 27 168 16 72 74 48 248 33 0 8 75 117 160 49 290 160 31 91 52 31 93 110 7 0
OG0000006 5085 Version not verified Version not verified Version not verified 41 29 1 296 2 102 277 18 4 14 5 80 54 4 8 5 5 2 2 17 26 57 15 8 3 6 37 447 797 355 117 129 191 151 270 26 138 2 3 4 15 19 204 2 20 57 110 134 135 339 53 32 93 36 11 25 16 35 1
OG0000007 5049 Version not verified Version not verified Version not verified 46 38 0 862 0 200 325 10 0 21 0 154 18 0 1 0 26 23 9 57 97 56 36 3 0 0 12 201 382 337 107 80 208 129 366 9 61 6 3 3 39 11 34 0 1 143 124 206 268 56 144 27 8 41 21 16 24 0 0
OG0000008 4835 Version not verified Version not verified Version not verified 81 76 0 40 7 99 288 49 13 19 1 100 234 118 37 42 11 0 40 119 0 44 15 168 6 12 3 89 98 21 41 0 20 25 331 28 206 3 12 12 32 45 3 1 94 7 9 603 124 860 65 21 109 189 58 27 71 9 0
OG0000009 4511 Version not verified Version not verified Version not verified 37 50 0 277 0 136 126 25 7 19 0 75 22 3 5 10 26 4 0 17 169 11 19 0 2 6 9 333 526 456 208 161 319 182 128 57 40 8 0 0 10 3 82 0 12 143 169 256 87 103 12 15 10 20 18 56 37 3 2
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