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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Aster-Orthologous

  Genes that are duplicated as concomitant events of species formation and continue to have the same function are called orthologous genes. New gene functions can be caused by duplications that occur within the genome of a single species. Duplications within a genome result in paralogous gene.
  Orthogroups, orthologs and paralogs genes were identified using OrthoFinder (v2.5.1). First, the similarity relationship between protein sequences of all species was based on the Blastp similarity score (E-value 1e-5). The sequence alignment program was blast_gz and the conformational tree method was FastTree. MCL graph clustering algorithm (Inflation value >1.5) was used for cluster analysis to obtain single-copy and multi-copy gene families.
Select Orthogroup Total Tree Image Download Aann Aary Amar Amtr Arla Armi Artr Bial Busi Cati Ccar Ceso Chla Chma Chmo Chna Cich Cien Cind Cobi Cpa Dapi Desu Ecan Enbr Eupl Fbi Fbr Ffl Fli Fra Fro Fso Ftr Glco Hean Hetu Heub Laca Lasa Lomi Lssa Mimi Nenu Nin Pdy Pin Pslu Sain Scae Sesq Smso Soca Stre Taer Tako Tamo Tesi Vivi
OG0000020 2967 11 18 0 132 0 83 227 30 9 20 3 55 25 16 9 7 15 7 9 20 83 69 25 23 1 19 2 162 217 138 42 88 203 59 112 12 49 6 7 7 12 18 58 0 29 141 242 61 45 50 90 18 26 67 42 17 31 0 0
OG0000021 2938 70 137 17 51 41 34 104 161 0 50 23 80 103 76 252 52 16 20 64 27 13 38 32 75 29 0 7 22 26 33 33 36 33 35 77 83 42 41 54 58 42 75 39 0 13 34 29 53 39 96 35 33 61 83 30 74 57 0 0
OG0000022 2887 128 152 31 85 23 25 69 87 57 55 22 41 64 3 195 107 17 37 37 17 16 19 28 95 70 5 2 14 61 18 15 16 10 13 42 132 19 39 53 55 42 62 55 32 40 20 19 56 26 159 15 23 125 48 39 54 20 6 72
OG0000023 2839 76 287 21 24 6 1 139 118 0 16 2 29 110 200 391 113 14 14 12 23 2 22 38 92 30 0 6 8 23 17 14 14 13 14 86 110 22 90 11 15 47 15 34 0 0 45 22 105 5 96 14 27 5 81 69 39 12 0 0
OG0000024 2813 10 12 0 373 0 127 226 9 5 16 0 48 32 2 0 5 7 13 11 29 58 17 21 7 1 11 6 138 233 165 66 107 138 92 100 23 24 4 3 4 19 33 27 0 8 73 64 85 148 32 41 7 29 34 12 18 16 20 4
OG0000025 2676 13 25 0 54 0 118 137 9 3 51 0 115 56 1 0 10 7 58 2 13 32 13 0 18 5 1 6 96 156 71 54 20 109 51 380 13 52 1 0 0 29 70 61 0 10 30 25 258 124 175 58 8 26 19 8 9 13 3 0
OG0000026 2543 90 398 1 45 19 34 210 57 3 66 8 72 119 3 318 15 7 12 19 22 6 21 9 25 34 5 6 9 21 11 12 18 13 9 56 63 48 5 49 53 10 62 43 27 6 24 34 12 14 31 5 48 39 24 16 81 59 4 13
OG0000027 2534 0 0 0 149 2 139 5 66 1 1 0 54 0 0 0 0 0 0 0 88 0 52 7 34 0 3 0 5 11 6 13 1 43 24 4 53 583 0 0 0 0 1 13 2 16 0 0 561 122 99 63 35 73 109 7 31 58 0 0
OG0000028 2502 25 56 13 130 4 3 123 45 0 26 0 34 71 102 103 56 4 5 35 40 1 59 33 37 56 0 7 3 4 13 6 8 14 6 66 72 122 22 114 124 20 116 28 0 1 22 52 79 21 117 4 35 166 41 56 65 37 0 0
OG0000029 2390 34 8 0 348 0 0 258 98 0 0 0 0 33 81 174 20 5 4 0 44 0 35 11 0 6 0 0 90 75 30 57 17 36 119 165 92 94 0 0 0 13 14 62 0 0 0 46 10 70 77 84 17 12 13 23 14 1 0 0