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Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Hierarchical alignments with the Vitis vinifera genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Asteraceae genomes. We used Vitis vinifera as a reference, and by comparing homologous gene locus maps and Ks values between Vitis vinifera and other Asteraceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes.
  The relevant gene ids can be obtained from the Asteraceae blast and match under the Tools module. This link is Asteraceae blast and match.
Select Vivi_1 Arla_1 Armi_1 Sain_1 Ceso_1 Cati_1 Ccar_1 Cien_1 Cich_1 Lssa_1 Laca_1 Tako_1 Tamo_1 Pslu_1 Lomi_1 Lomi_2 Enbr_1 Ecan_1 Soca_1 Glco_1 Artr_1 Aary_1 Aary_2 Aann_1 Chma_1 Chmo_1 Chmo_2 Chmo_3 Chla_1 Chna_1 Cind_1 Pdy_1 Cobi_1 Hean_1 Bial_1 Bial_2 Dapi_1 Dapi_2 Hetu_1 Hetu_2 Hetu_3 Amtr_1 Smso_1 Smso_2 Taer_1 Fro_1 Fso_1 Ftr_1 Fra_1 Fli_1 Stre_1 Mimi_1 Cobi_2 Hean_2 Bial_3 Bial_4 Dapi_3 Dapi_4 Hetu_4 Hetu_5 Hetu_6 Amtr_2 Smso_3 Smso_4 Taer_2 Fro_2 Fso_2 Ftr_2 Fra_2 Fli_2
Vivi1g00001 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vivi1g00002 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vivi1g00003 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vivi1g00004 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vivi1g00005 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vivi1g00006 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vivi1g00007 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vivi1g00008 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vivi1g00009 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vivi1g00010 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
First Previous Page 1 of 2365 Last
Gene_GFF
Select Chromosome Start End Strand Old_gene Gene Num
1 169581555 169582734 + chr1g0161851 Aann1g06514 6514
8 44092573 44098879 + chr8g1064711 Aann8g00808 808
4 193995332 194000427 - Aargg4g28770.1 Aary4g02877 2877
12 184174115 184186372 + Aargg12g26880.1 Aary12g02688 2688
5 5529048 5535218 + evm.model.000113F.265 Arla5g00270 270
14 15018750 15019793 + evm.model.000126F.29 Arla14g00274 274
3 6313304 6319563 + AmiAMIRv0_Chr03g0092231 Armi3g00290 290
13 61497376 61498416 - AmiAMIRv0_Chr13g0395001 Armi13g01435 1435
4 60578282 60582916 + AtridAMIRv0_Chr04g0461931 Artr4g01938 1938
6 253668141 253669103 + AtridAMIRv0_Chr06g0779601 Artr6g07633 7633
4 89365762 89375068 - CtAH04T0234800.3 Cati4g03120 3120
7 8416339 8417433 - gnl|WGS:LEKV|Ccrd_005715.mRNA.1_mrna Ccar7g00634 634
12 2339729 2348121 + gnl|WGS:LEKV|Ccrd_000192.mRNA.1_mrna Ccar12g00188 188
2 104732420 104732953 - >KAJ9563744.1 Ceso2g04372 4372
9 204585097 204587067 - CmaNakai_Chr09g0895081 Chma9g06484 6484
10 85187491 85199332 + evm.model.scaffold_500.388 Chmo10g01333 1333
11 62234376 62241190 + evm.model.scaffold_5723.65 Chmo11g01324 1324
12 72612130 72626806 + evm.model.scaffold_1351.17 Chmo12g01364 1364
1 74962895 74965421 + Cn0087260 Chna1g00964 964
3 7192043 7194649 + KAI3763712.1 Cich3g00272 272
3 114794373 114795371 + KAI3767790.1 Cich3g04350 4350
8 45471159 45472166 + KAI3499884.1 Cien8g02301 2301
6 95435841 95436934 + D.indicum_Contig18_G00123.t1 Cind6g01164 1164
1 83985701 83986621 + h2tg000014l_1.g2236.t1 Cobi1g03500 3500
4 31257751 31259999 - XM_043769998.1 Ecan4g02009 2009
2 62676413 62677456 - FliAMIRv0_Chr02g0063841 Fli2g02960 2960
7 61750169 61751170 + FraAMIRv0_Chr07g0108501 Fra7g00985 985
11 22895209 22896201 - FroAMIRv0_Chr11g0184141 Fro11g02371 2371
12 71940278 71941276 + FtrAMIRv0_Chr12g0347891 Ftr12g01678 1678
9 132272100 132273119 - gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr09g0391721 Hean9g02526 2526
8 13553720 13557870 + LmiAMIRv0_Chr08g0253891 Lomi8g01367 1367
9 28000794 28001831 + LmiAMIRv0_Chr09g0282331 Lomi9g01582 1582
4 20459360 20461260 + >KAJ0209133.1 Lssa4g00468 468
4 304238225 304239238 - >KAJ0211865.1 Lssa4g04848 4848
4 21948675 21949181 + PluAMIRv0_Chr04g0613081 Pslu4g03355 3355
9 216186796 216192270 + SinAMIRv0_Chr09g0250191 Sain9g04125 4125
14 54282242 54283156 + KAI3784341.1 Smso14g01112 1112
22 49991773 49992675 + KAI3725689.1 Smso22g00937 937
4 76831968 76832939 + Streb.4G010210.1 Stre4g01021 1021
2 90341400 90342377 + >KAK1432414.1 Taer2g01585 1585
3 24947362 24948339 - TbA03G103970.1 Tamo3g01199 1199
1 10731 27033 + GSVIVT01012261001 Vivi1g00001 1
1 32355 36097 + GSVIVT01012259001 Vivi1g00002 2
1 46794 47258 - GSVIVT01012258001 Vivi1g00003 3
1 48574 58015 + GSVIVT01012257001 Vivi1g00004 4
1 92040 107832 - GSVIVT01012255001 Vivi1g00005 5
1 109279 110282 - GSVIVT01012253001 Vivi1g00006 6
1 112285 118695 + GSVIVT01012252001 Vivi1g00007 7
1 150382 175544 - GSVIVT01012250001 Vivi1g00008 8
1 194107 206538 - GSVIVT01012249001 Vivi1g00009 9
1 220862 222178 + GSVIVT01012248001 Vivi1g00010 10
       
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