Comprehensive collection of Asteraceae resources & tools
Specialized Asteraceae Database
AMIR
Full name
Asteraceae Multi-omics Information Resource
Function
Platform for collecting, organizing, displaying, and comparing omics data of Asteraceae species.
Data
3,897 expression profiles, 74 species, 132 genomes, 4M+ genes.
Visit Website
GCD
Full name
Global Compsitae Database
Function
Chrysanthemum genome database containing data and useful tools like sgRNA search.
Data
Reference genomes of 6 chrysanthemum species and transcriptome data.
Visit Website
E-Taxonomy
Full name
Cichorieae.e-taxonomy.net
Function
Classified and geographically referenced species of Cichorieae with descriptions and images.
Data
Includes 105 genera, covering over 7500 species and hybrids.
Visit Website
AGD
Full name
Asteraceae Genome Database
Function
High-quality genomic sequences and organelle genomic data with analytical tools.
Data
Tools include BLAST, JBrowse, SSR Finder, HmmSearch, Heatmap, etc.
Visit Website
ASTER-REP
Full Name
ASTER-REP, a database of Asteraceae sequences for studying structure and function of transposable elements
Function
Database for studying structure and function of transposable elements in Asteraceae.
Data
Total of 328,696 full-length TEs included.
Visit Website
LettuceGDB
Full Name
Lettuce Genome Database
Function
LettuceGDB integrates lettuce multi-omics and phenotypic data, with analysis tools for research and breeding.
Data
1,048 lettuce resequencing, 1,300+ germplasm accessions, millions of phenotypic records, 269 reanalyzed RNA-Seq datasets.
Visit Website
GSAD
Full Name
Genome size in Asteraceae database
Function
Catalogue of genome size data for Asteraceae family.
Data
Genome sizes of 1,555 species, 337 species and 46 genera.
Visit Website
CGD
Full Name
Candida Genome Database
Function
Chrysanthemum genome database with visualized expression data.
Data
Reference genomes of 6 species, transcriptome data from 9 tissues.
Visit Website
LGR
Full Name
LETTUCE GENOME RESOURCE
Function
LGR provides genomic, genetic and comparative genomics data for lettuce and its relatives, supporting global lettuce breeding and Asteraceae research.
Data
Lactuca sativa genome, 21 novel microRNAs
Visit Website
Comprehensive related database
PlantCFG
Description
A comprehensive database with web tools for analyzing candidate flowering genes in multiple plants.
Visit Website
plantGIR
Description
PlantGIR is a comprehensive plant genomic database integrating genome assemblies, gene annotations, and transcription factor data for 1,119 species, offering tools like Blast and sequence alignment for phylogenetic and functional studies.
Visit Website
MPDB
Description
MPDB is a multi-omics database for medicinal plants, aggregating genomic, transcriptomic, proteomic, and metabolomic data from 200 species to elucidate secondary metabolite pathways and gene functions.
Visit Website
CyMSatDB
Description
CyMSatDB (Globe Artichoke Genome Database) offers high-quality genome assemblies, annotations, and variation data for Cynara cardunculus, enabling genome browsing and genetic map analysis via JBrowse.
Visit Website
TRY
Description
TRY is the world's largest open-access plant trait database with 5 billion records across 50,000 species, facilitating ecological and evolutionary studies at individual to ecosystem scales.
Visit Website
GERDH
Description
GERDH is a multi-omics database for horticultural plants, integrating RNA-seq, ChIP-seq, and epigenetic data to enable cross-species co-expression and regulatory analysis.
Visit Website
Phytozome
Description
Phytozome is a comparative genomics platform offering genome browsers, alignment tools, and visualization for plant genome comparison and gene family analysis.
Visit Website
CoGe
Description
CoGe is a collaborative comparative genomics platform with tools for genome alignment, synteny analysis, and experimental data management for large-scale projects.
Visit Website
NCBI
Description
NCBI is a cornerstone of biomedical research, offering genomic sequences, literature, and analytical tools, though currently inaccessible due to technical issues.
Visit Website
NGDC
Description
CNCB-NGDC builds data archive platforms and information systems, develops advanced algorithms and tools for data-driven discoveries, and provides open access to database resources to support global academic and industrial research.
Visit Website
GNDC
Description
GNDC houses a billion-scale repository of gene-encoded natural compounds, creating a "chemical space" linking genomic data with compound features/functions to revolutionize drug discovery via AI-driven target prediction.
Visit Website
NPASS
Description
NPASS 2.0 integrates 210,000 quantified bioactivity records linking 13,000 natural products to 4,000+ targets, enabling structure-activity relationship analysis and cross-species pharmacological predictions for drug lead optimization.
Visit Website
PCMD
Description
PCMD encompasses 210,000 experimentally validated metabolites across 530 plant species using genome-scale models, featuring species/metabolite comparison, pathway enrichment, and cross-database ID conversion tools.
Visit Website
plant genome
Description
This database systematically archives plant genomes published since 2023, offering chronological listings and statistical summaries to track advancements and sharing trends in plant genomics research.
Visit Website
Online Bioinformatics Tool Website
evolview
Description
Evolview is an online tool for visualizing and managing customized, annotated phylogenetic trees – it supports multi-format visualization, custom tree editing with built-in functions and user data, and export of publication-ready figures, and offers enhanced interactive tools to simplify evolutionary analyses.
Visit Website
itol
Description
Interactive Tree Of Life is an online tool for the display, annotation and management of phylogenetic and other trees, enabling direct browser-based tree management, visualization and annotation with various datasets.
Visit Website
MEME
Description
The MEME Suite is an integrated toolkit for motif discovery, scanning, comparison, and enrichment analysis in DNA, RNA, and protein sequences, available via web server and local installation.
Visit Website
AKRUP
Description
AKRUP is a universal genetic pipeline for ancestral karyotype reconstruction, which supports bottom-up ancestral karyotype inferences and top-down inferences of ancient chromosome evolutionary trajectories.
Visit Website
ExPASy
Description
Expasy, a registry by SIB Swiss Institute of Bioinformatics, curates SIB-developed bioinformatics tools, databases and datasets, providing detailed information to support life science and clinical research across genomics, proteomics and other key domains.
Visit Website
IQTree
Description
IQ-TREE is a high-performance phylogenomic inference software developed to address the computational and analytical challenges of big phylogenomic/transcriptomic data, boasting superior accuracy, fast analysis speed, high flexibility for new models and data types, and versatile maximum likelihood analysis functions.
Visit Website
DNA C
Description
Royal Botanic Gardens, Kew's DNA C-values Database offers nuclear genome size data for 12,273 plant species, serving as a key resource for cytogenetic and evolutionary studies.
Visit Website
Softberry
Description
Softberry offers gene prediction tools for identifying gene structures across diverse species, widely used in genomic annotation workflows.
Visit Website
ChiPlot
Description
ChiPlot is a versatile bioinformatics visualization tool supporting 12 chart types including heatmaps, boxplots, and scatter plots.
Visit Website
HMMER
Description
HMMER is a bioinformatics tool using hidden Markov models for protein sequence analysis, offering both web and local deployment options.
Visit Website
InterPro
Description
InterPro integrates protein family classifications, offering functional annotations and domain predictions for proteins.
Visit Website
SMART
Description
SMART specializes in protein domain analysis, enabling cross-species conserved domain queries.
Visit Website
CDD
Description
CDD is a conserved domain database incorporating annotations from multiple sources for protein domain analysis.
Visit Website
SynVisio
Description
SynVisio is an interactive synteny browser for multi-species chromosomal comparison and visualization.
Visit Website
plantCARE
Description
PlantCARE is a database of plant cis-regulatory elements, focusing on promoter region functional motifs.
Visit Website
plantiSMASH
Description
plantiSMASH is a tool for predicting secondary metabolite gene clusters, supporting batch analysis and visualization.
Visit Website
SWISS-MODEL
Description
SWISS-MODEL is a protein structure homology modeling platform offering automated modeling and visualization.
Visit Website
UniProt
Description
UniProt is a comprehensive protein database integrating sequence, functional, and disease-related information.
Visit Website
ESPript
Description
ESPript is a tool for visualizing multiple sequence alignment results in customizable formats.
Visit Website
PlantGSAD
Description
PlantGSAD is a plant gene set annotation database featuring 9 categories and 44 species datasets.
Visit Website
iTAK
Description
iTAK identifies and classifies plant transcription factors and protein kinases into gene families.
Visit Website
STRING
Description
STRING constructs a global functional protein association network integrating experimental and predicted interactions, enabling cross-species functional enrichment analysis and pathway annotation.
Visit Website
PlantTFDB
Description
PlantTFDB is a database of plant transcription factors, featuring detailed annotations for 165 species.
Visit Website
WEGO
Description
WEGO is a GO annotation visualization tool supporting multi-file comparisons and differential analysis.
Visit Website
eggNOG-mapper
Description
eggNOG-mapper is a functional annotation tool leveraging eggNOG orthologous groups.
Visit Website
KEGG
Description
KEGG is an integrated database for biological pathways and genomic data analysis.
Visit Website
T-Coffee
Description
T-Coffee is a multiple sequence alignment tool optimizing results through hybrid methods.
Visit Website
TAIR
Description
TAIR is the authoritative database for Arabidopsis thaliana genomics, offering gene structure, expression, and mutant data.
Visit Website
DDBJ
Description
DDBJ is Japan's nucleotide sequence database, participating in international nucleotide data collaborations.
Visit Website
EMBL-EBI
Description
EMBL-EBI is the European Bioinformatics Institute's resource hub for genomic, proteomic, and metabolic data.
Visit Website
SignalP6.0
Description
SignalP 6.0 accurately predicts signal peptide types (Sec/SPI/Tat, etc.) and cleavage sites in proteins across prokaryotes/eukaryotes, aiding research on protein secretion and localization mechanisms.
Visit Website
DeepTMHMM
Description
DeepTMHMM uses deep learning to predict α-helical/β-barrel transmembrane protein topologies across all domains of life, ideal for metagenomics and membrane protein functional analysis.
Visit Website
GSDS
Description
GSDS is an online server for visualizing and analyzing gene structures.
