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AGRP

Asteraceae Genomic Research Platform

Gene Search

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Transposable elements

  Transposable elements (TEs): also known as jumping genes, are DNA sequences that can change their position in a cell. There are two types of transposons: type I transposons (Retrotransposon) and type II transposons (DNA transposons).
  Class I (Retrotransposons): A class of transposons that insert into the genome via reverse transcription of an RNA intermediate, including LTR (Long Terminal Repeat) and non-LTR (Long Terminal Repeat-less) subclasses such as Copia, Gypsy (LTR), LINE, and SINE (non-LTR). Class II (DNA transposons): Transposons that undergo “cut-and-paste” transposition directly in DNA form, encompassing multiple superfamilies (e.g., CACTA, Harbinger, hAT) and short subtypes like MITEs (miniature inverted-repeat transposable elements).
  We detected a total of 187,648,748 TEs across 53 Asteraceae species and 6 outgroups.

Ambrosia artemisiifolia

Homologues
Total : 2,527,039

Ambrosia trifida

Homologues
Total : 2,922,939

Arctium lappa

Homologues
Total : 3,668,380

Arctium minus

Homologues
Total : 3,708,805

Artemisia annua

Homologues
Total : 1,986,406

Artemisia argyi

Homologues
Total : 6,182,543

Artemisia tridentata

Homologues
Total : 6,629,794

Bidens alba

Homologues
Total : 6,329,944

Carthamus tinctorius

Homologues
Total : 2,277,741

Centaurea solstitialis

Homologues
Total : 1,653,687

Centrapalus pauciflorus

Homologues
Total : 2,153,974

Chrysanthemum indicum

Homologues
Total : 4,307,111

Chrysanthemum lavandulifolium

Homologues
Total : 4,311,438

Chrysanthemum makinoi

Homologues
Total : 4,675,435

Chrysanthemum morifolium

Homologues
Total : 11,537,163

Chrysanthemum nankingense

Homologues
Total : 4,664,628

Cichorium intybus

Homologues
Total : 2,226,959

Cichorium endivia

Homologues
Total : 1,417,011

Cosmos bipinnatus

Homologues
Total : 1,676,706

Cynara cardunculus

Homologues
Total : 1,704,499

Dahlia pinnata

Homologues
Total : 13,467,179