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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Aster-Orthologous

  Genes that are duplicated as concomitant events of species formation and continue to have the same function are called orthologous genes. New gene functions can be caused by duplications that occur within the genome of a single species. Duplications within a genome result in paralogous gene.
  Orthogroups, orthologs and paralogs genes were identified using OrthoFinder (v2.5.1). First, the similarity relationship between protein sequences of all species was based on the Blastp similarity score (E-value 1e-5). The sequence alignment program was blast_gz and the conformational tree method was FastTree. MCL graph clustering algorithm (Inflation value >1.5) was used for cluster analysis to obtain single-copy and multi-copy gene families.
Select Orthogroup Total Tree Image Download Aann Aary Amar Amtr Arla Armi Artr Bial Busi Cati Ccar Ceso Chla Chma Chmo Chna Cich Cien Cind Cobi Cpa Dapi Desu Ecan Enbr Eupl Fbi Fbr Ffl Fli Fra Fro Fso Ftr Glco Hean Hetu Heub Laca Lasa Lomi Lssa Mimi Nenu Nin Pdy Pin Pslu Sain Scae Sesq Smso Soca Stre Taer Tako Tamo Tesi Vivi
OG0000010 4351 43 151 0 228 0 228 451 18 2 7 0 78 58 0 2 0 20 22 5 67 48 58 15 9 0 0 18 244 379 244 116 103 159 81 303 17 38 1 1 1 25 32 146 0 1 114 102 183 202 78 114 31 17 39 25 8 16 2 1
OG0000011 4325 45 81 9 242 2 102 259 68 0 154 36 49 150 106 33 17 19 24 76 71 29 81 83 55 6 1 2 37 120 113 25 33 38 18 215 34 176 11 88 91 12 219 90 0 0 31 124 217 115 57 64 45 185 58 128 98 83 0 0
OG0000012 4173 30 2 0 193 2 69 517 26 57 15 0 108 27 7 8 0 26 34 25 75 31 60 37 326 0 8 2 47 80 44 40 20 78 44 76 56 87 4 6 7 67 88 47 0 0 216 199 470 210 181 94 28 38 50 30 44 72 65 0
OG0000013 3736 99 105 62 96 42 61 76 116 30 51 15 81 70 74 224 86 40 47 82 53 37 118 63 66 51 4 32 37 30 33 44 46 42 35 59 147 154 22 44 53 32 56 46 14 54 49 55 41 31 71 35 118 149 71 63 78 68 48 30
OG0000014 3659 36 89 0 70 0 124 110 44 0 63 0 209 21 2 1 0 168 41 2 198 6 37 2 10 0 1 0 45 72 23 73 19 96 267 74 26 118 4 1 1 30 70 93 0 0 230 414 332 149 45 12 42 25 46 22 46 49 1 0
OG0000015 3479 50 133 0 317 0 87 282 9 0 14 1 10 34 2 2 1 7 9 3 27 5 10 11 37 1 0 5 96 176 302 91 34 37 38 258 66 49 1 0 0 24 12 10 0 0 53 33 271 267 279 137 10 66 62 22 14 13 1 0
OG0000016 3240 1 23 0 360 0 3 171 9 1 0 0 10 2 90 10 0 7 1 3 19 28 28 2 6 0 0 9 272 178 270 172 74 368 318 164 67 198 3 0 0 12 14 25 0 0 4 16 66 1 32 31 52 3 14 5 56 42 0 0
OG0000017 3236 13 41 2 167 2 146 427 47 7 15 1 47 45 12 4 4 8 3 8 24 45 28 55 24 1 26 1 23 32 97 24 22 25 24 255 21 29 9 3 3 31 42 51 0 14 164 114 473 116 59 129 9 86 46 23 43 66 0 0
OG0000018 3191 12 35 1 200 4 149 230 32 0 6 4 64 60 58 12 6 24 15 6 22 40 66 34 27 5 3 8 53 124 163 42 38 69 55 130 11 41 3 94 97 20 151 20 0 5 52 89 163 233 113 25 37 10 53 43 47 79 8 0
OG0000019 3034 30 25 1 165 0 177 259 8 65 81 0 98 72 5 8 1 19 23 20 31 8 42 53 28 1 1 10 26 33 86 53 27 73 71 119 17 34 12 14 15 65 112 22 0 20 81 105 155 237 56 66 16 68 87 21 26 56 30 0