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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Aster-Orthologous

  Genes that are duplicated as concomitant events of species formation and continue to have the same function are called orthologous genes. New gene functions can be caused by duplications that occur within the genome of a single species. Duplications within a genome result in paralogous gene.
  Orthogroups, orthologs and paralogs genes were identified using OrthoFinder (v2.5.1). First, the similarity relationship between protein sequences of all species was based on the Blastp similarity score (E-value 1e-5). The sequence alignment program was blast_gz and the conformational tree method was FastTree. MCL graph clustering algorithm (Inflation value >1.5) was used for cluster analysis to obtain single-copy and multi-copy gene families.
Select Orthogroup Total Tree Image Download Aann Aary Amar Amtr Arla Armi Artr Bial Busi Cati Ccar Ceso Chla Chma Chmo Chna Cich Cien Cind Cobi Cpa Dapi Desu Ecan Enbr Eupl Fbi Fbr Ffl Fli Fra Fro Fso Ftr Glco Hean Hetu Heub Laca Lasa Lomi Lssa Mimi Nenu Nin Pdy Pin Pslu Sain Scae Sesq Smso Soca Stre Taer Tako Tamo Tesi Vivi
OG0000030 2388 55 67 9 36 36 26 84 62 13 51 24 53 64 5 228 17 16 14 21 28 21 65 33 30 10 13 19 21 29 23 29 28 30 19 95 45 90 43 46 46 41 52 38 21 18 33 34 59 35 55 72 60 53 40 14 45 29 35 10
OG0000031 2354 76 159 16 39 7 19 152 125 80 38 11 48 79 6 266 7 6 21 25 37 7 22 12 56 32 3 4 14 15 11 18 18 18 18 74 79 61 20 27 29 19 29 44 19 89 22 36 33 22 55 26 62 14 21 36 15 34 9 14
OG0000032 2349 35 81 13 40 13 13 179 96 44 40 7 33 71 216 248 138 26 5 23 28 6 66 7 18 15 15 14 17 14 4 13 13 15 13 52 43 134 4 45 47 8 54 30 32 4 14 26 8 21 24 17 45 51 24 6 15 10 24 32
OG0000033 2347 3 5 6 64 0 135 111 11 115 96 1 41 37 4 2 3 12 6 14 16 39 31 18 34 0 1 2 37 98 141 26 9 13 73 131 0 45 4 44 45 56 79 9 0 26 36 90 154 180 60 83 9 15 10 4 29 31 3 0
OG0000034 2179 57 112 40 35 20 16 72 72 17 42 10 46 55 99 162 61 21 25 70 23 9 46 20 43 41 12 6 9 18 6 14 12 17 11 30 60 60 43 30 34 36 36 43 2 6 21 29 34 17 82 26 46 97 38 26 37 19 5 3
OG0000035 2179 7 9 0 347 0 158 86 9 0 63 3 53 49 2 1 5 9 14 14 16 19 16 6 9 0 0 12 92 176 133 28 21 80 47 113 8 13 0 8 8 15 27 10 0 2 53 47 70 132 12 118 6 9 7 0 14 23 0 0
OG0000036 2167 33 13 0 68 0 28 134 8 0 46 0 63 32 10 9 35 12 13 5 15 46 10 11 20 7 0 1 7 21 64 14 12 34 10 123 1 40 5 177 187 21 171 17 0 11 36 74 176 22 53 51 7 15 19 15 74 87 4 0
OG0000037 2160 9 15 9 60 5 91 128 27 45 125 2 46 54 23 11 11 20 21 16 24 23 43 19 10 4 20 8 24 39 57 37 20 27 14 49 10 40 6 68 70 23 154 22 13 31 41 99 60 71 57 64 29 30 34 8 22 19 50 3
OG0000038 2154 2 10 5 248 0 0 40 84 0 4 0 2 104 63 32 18 28 39 182 49 3 25 31 0 18 0 0 91 149 50 3 2 0 7 10 189 55 1 34 34 2 6 13 0 0 0 3 48 1 145 17 55 19 23 24 59 127 0 0
OG0000039 2044 53 93 6 36 15 18 61 109 20 39 17 21 26 96 141 75 21 4 69 29 6 32 24 45 39 37 4 16 16 11 17 24 19 11 26 64 50 24 13 14 35 21 44 38 48 24 30 37 19 60 22 30 76 34 28 17 10 20 10