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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Aster-Orthologous

  Genes that are duplicated as concomitant events of species formation and continue to have the same function are called orthologous genes. New gene functions can be caused by duplications that occur within the genome of a single species. Duplications within a genome result in paralogous gene.
  Orthogroups, orthologs and paralogs genes were identified using OrthoFinder (v2.5.1). First, the similarity relationship between protein sequences of all species was based on the Blastp similarity score (E-value 1e-5). The sequence alignment program was blast_gz and the conformational tree method was FastTree. MCL graph clustering algorithm (Inflation value >1.5) was used for cluster analysis to obtain single-copy and multi-copy gene families.
Select Orthogroup Total Tree Image Download Aann Aary Amar Amtr Arla Armi Artr Bial Busi Cati Ccar Ceso Chla Chma Chmo Chna Cich Cien Cind Cobi Cpa Dapi Desu Ecan Enbr Eupl Fbi Fbr Ffl Fli Fra Fro Fso Ftr Glco Hean Hetu Heub Laca Lasa Lomi Lssa Mimi Nenu Nin Pdy Pin Pslu Sain Scae Sesq Smso Soca Stre Taer Tako Tamo Tesi Vivi
OG0000050 1804 24 19 33 33 2 0 176 43 0 18 0 6 203 219 61 27 3 4 92 41 1 40 31 2 37 0 8 11 16 27 3 15 17 9 66 29 38 2 40 43 2 28 41 0 0 4 14 12 0 34 19 41 59 35 44 20 12 0 0
OG0000051 1782 67 81 27 44 7 10 61 51 0 53 4 27 51 88 173 62 16 12 54 10 10 17 15 55 71 0 1 6 10 3 7 8 8 7 70 82 23 46 26 27 12 31 4 0 2 18 23 60 17 28 49 18 32 36 18 24 20 0 0
OG0000052 1768 91 24 0 21 0 28 170 13 2 32 0 79 52 69 40 12 3 2 68 27 0 19 16 13 7 8 1 17 40 6 11 1 10 5 115 16 72 9 29 29 9 30 3 0 6 3 1 152 37 173 43 11 59 13 19 18 32 2 0
OG0000053 1736 8 0 0 167 0 120 76 3 0 31 0 47 11 0 0 0 1 2 5 0 13 4 8 2 0 1 4 127 175 140 44 42 122 58 40 6 13 1 4 5 14 7 28 2 3 33 64 34 74 52 38 3 37 26 6 9 15 10 1
OG0000054 1725 29 76 9 17 17 18 39 65 0 47 13 51 33 44 97 34 2 8 32 23 1 24 16 55 61 0 4 8 19 10 12 17 6 9 17 30 43 14 37 38 5 61 57 0 3 23 41 13 18 125 28 25 27 89 37 57 40 0 1
OG0000055 1688 34 59 16 20 21 21 23 47 14 28 11 19 34 47 104 30 25 21 41 27 14 51 23 39 29 7 14 16 17 12 22 25 18 20 27 48 77 17 30 32 24 32 24 18 20 20 19 29 26 24 27 56 41 24 28 29 19 19 29
OG0000056 1681 12 3 0 78 2 140 90 11 2 4 0 32 21 3 2 7 12 9 7 14 7 38 35 7 2 18 1 29 51 106 100 11 71 133 66 18 30 1 5 5 2 29 7 8 13 20 62 34 126 19 44 9 20 54 11 14 25 0 1
OG0000057 1672 5 3 5 82 3 78 45 52 0 5 1 28 27 7 4 1 3 4 3 38 3 36 18 53 2 30 0 46 2 3 26 10 27 25 18 60 79 3 13 15 39 99 86 0 0 12 173 69 47 75 55 16 50 14 17 11 42 2 2
OG0000058 1635 1 0 0 2 0 18 5 4 0 0 1 1 1 0 0 0 1 0 0 0 0 1 2 0 1 1 2 242 149 54 80 133 372 422 1 1 7 1 0 0 0 0 33 0 11 2 1 7 4 5 42 21 3 2 0 1 0 0 0
OG0000059 1621 2 0 0 49 0 60 51 11 0 0 0 8 1 1 0 0 13 5 0 6 8 14 0 3 0 0 1 49 4 8 23 101 151 201 87 1 13 0 0 0 18 7 5 0 0 75 172 110 59 34 175 30 13 0 3 13 36 0 0