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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Aster-Orthologous

  Genes that are duplicated as concomitant events of species formation and continue to have the same function are called orthologous genes. New gene functions can be caused by duplications that occur within the genome of a single species. Duplications within a genome result in paralogous gene.
  Orthogroups, orthologs and paralogs genes were identified using OrthoFinder (v2.5.1). First, the similarity relationship between protein sequences of all species was based on the Blastp similarity score (E-value 1e-5). The sequence alignment program was blast_gz and the conformational tree method was FastTree. MCL graph clustering algorithm (Inflation value >1.5) was used for cluster analysis to obtain single-copy and multi-copy gene families.
Select Orthogroup Total Tree Image Download Aann Aary Amar Amtr Arla Armi Artr Bial Busi Cati Ccar Ceso Chla Chma Chmo Chna Cich Cien Cind Cobi Cpa Dapi Desu Ecan Enbr Eupl Fbi Fbr Ffl Fli Fra Fro Fso Ftr Glco Hean Hetu Heub Laca Lasa Lomi Lssa Mimi Nenu Nin Pdy Pin Pslu Sain Scae Sesq Smso Soca Stre Taer Tako Tamo Tesi Vivi
OG0000070 1436 4 2 7 82 11 42 117 6 0 17 1 10 40 85 39 6 2 2 35 2 12 11 2 5 32 0 5 26 74 98 11 12 22 22 48 6 10 2 49 51 8 42 11 3 9 40 54 43 74 34 11 1 21 10 25 20 22 0 0
OG0000071 1405 24 17 25 32 14 6 64 39 0 15 0 3 76 93 65 35 1 1 24 33 2 34 24 4 40 0 0 2 4 18 8 11 20 14 73 87 53 6 19 20 7 12 10 0 0 16 8 39 12 22 25 59 37 45 28 49 30 0 0
OG0000072 1376 3 8 7 43 84 58 50 9 0 40 16 10 36 42 42 13 4 0 10 15 7 10 10 3 33 0 7 19 33 28 5 7 8 12 42 30 15 7 34 37 3 47 42 0 0 13 34 22 88 36 39 29 58 8 12 52 56 0 0
OG0000073 1367 58 50 0 32 2 17 58 25 3 2 2 5 58 2 29 0 13 11 43 32 23 54 22 29 6 17 16 16 24 18 21 19 20 18 82 45 54 27 3 3 23 2 14 18 24 22 27 34 13 36 38 28 46 22 13 5 15 19 9
OG0000074 1359 9 14 3 11 16 88 37 23 0 74 4 24 32 32 27 9 8 7 18 17 36 8 4 16 12 1 0 6 12 9 6 8 13 6 37 10 14 9 41 44 6 78 17 10 3 40 98 25 113 19 14 37 48 13 6 39 47 0 1
OG0000075 1358 28 54 34 26 11 16 34 46 18 18 12 20 65 42 110 42 9 17 40 15 1 29 16 16 23 4 5 7 9 9 17 16 17 14 33 33 62 14 13 14 11 20 32 9 12 25 17 15 19 20 19 38 7 35 26 10 5 17 12
OG0000076 1354 15 16 42 40 4 12 33 74 18 11 7 15 16 23 60 17 14 8 17 25 14 37 32 34 15 0 7 22 20 17 23 17 19 16 14 56 61 9 18 19 14 13 31 20 12 21 24 21 18 29 14 36 56 42 22 19 12 22 11
OG0000077 1354 1 2 0 42 0 106 30 4 0 2 1 10 20 0 2 2 4 8 11 3 23 5 2 12 0 0 8 67 65 121 30 54 101 69 57 18 8 2 0 0 15 41 6 0 0 50 94 28 84 66 37 9 3 17 4 2 3 5 0
OG0000078 1343 2 0 0 0 0 0 1309 0 0 0 0 0 10 7 9 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 0 0 0 0 0 0 0 0 0 0 0
OG0000079 1342 15 33 19 20 21 29 21 25 36 24 14 20 37 25 95 37 29 38 40 14 17 22 11 22 19 4 6 6 6 10 12 14 12 9 21 33 58 19 29 29 22 29 13 3 10 21 11 29 19 27 17 35 49 23 16 27 27 6 7