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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Aster-Orthologous

  Genes that are duplicated as concomitant events of species formation and continue to have the same function are called orthologous genes. New gene functions can be caused by duplications that occur within the genome of a single species. Duplications within a genome result in paralogous gene.
  Orthogroups, orthologs and paralogs genes were identified using OrthoFinder (v2.5.1). First, the similarity relationship between protein sequences of all species was based on the Blastp similarity score (E-value 1e-5). The sequence alignment program was blast_gz and the conformational tree method was FastTree. MCL graph clustering algorithm (Inflation value >1.5) was used for cluster analysis to obtain single-copy and multi-copy gene families.
Select Orthogroup Total Tree Image Download Aann Aary Amar Amtr Arla Armi Artr Bial Busi Cati Ccar Ceso Chla Chma Chmo Chna Cich Cien Cind Cobi Cpa Dapi Desu Ecan Enbr Eupl Fbi Fbr Ffl Fli Fra Fro Fso Ftr Glco Hean Hetu Heub Laca Lasa Lomi Lssa Mimi Nenu Nin Pdy Pin Pslu Sain Scae Sesq Smso Soca Stre Taer Tako Tamo Tesi Vivi
OG0000080 1339 12 7 2 28 0 62 87 4 3 55 0 55 56 4 7 15 1 1 1 2 10 1 11 11 2 1 0 7 7 10 14 10 13 15 91 5 3 8 77 77 6 142 18 0 7 20 72 65 58 38 57 3 12 7 11 21 27 0 0
OG0000081 1336 0 0 0 26 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 17 0 15 0 0 0 0 0 214 143 45 158 5 195 178 1 0 16 0 0 0 0 0 22 0 0 0 226 0 0 1 2 50 0 6 11 1 2 0 0
OG0000082 1333 15 25 31 31 16 19 13 12 6 22 7 17 25 35 83 26 11 16 30 27 19 13 26 29 16 3 8 8 9 13 25 17 16 20 35 41 102 23 25 26 16 27 17 6 5 31 18 22 13 21 28 16 52 32 29 21 22 13 3
OG0000083 1324 11 16 1 48 74 130 45 6 0 56 3 21 17 37 82 19 10 6 13 7 3 22 18 5 8 2 4 13 17 49 58 8 42 84 47 7 7 7 5 8 5 4 15 7 4 11 8 8 87 3 17 35 3 51 12 20 12 4 2
OG0000084 1313 22 32 29 28 15 14 14 39 13 25 13 24 23 31 62 17 14 27 26 12 10 20 19 18 26 4 12 14 6 13 17 21 21 7 25 34 58 14 20 20 17 22 25 8 18 23 22 18 13 24 22 42 42 29 31 36 16 20 26
OG0000085 1288 26 42 9 32 13 9 37 51 3 21 4 13 20 47 85 16 12 1 24 19 13 47 15 23 30 0 8 18 14 16 12 34 12 11 9 56 7 6 25 27 10 24 41 7 6 34 20 14 19 41 16 5 66 37 41 7 7 21 5
OG0000086 1288 4 0 0 46 0 86 33 0 0 12 0 25 11 1 2 5 1 0 4 4 92 8 7 1 3 0 23 62 90 75 38 63 129 46 83 9 13 4 1 3 6 30 38 0 2 25 15 52 35 33 13 3 4 38 3 1 5 1 0
OG0000087 1265 9 9 0 34 15 111 69 2 0 7 0 21 32 14 7 2 8 4 5 10 22 5 13 2 1 0 5 27 32 57 12 35 36 24 103 10 2 3 25 25 4 51 18 0 13 35 28 36 136 23 2 19 28 12 27 12 23 0 0
OG0000088 1248 23 29 0 36 18 24 46 47 2 0 4 42 33 2 131 42 18 17 43 21 8 8 19 26 10 0 4 9 18 14 10 25 10 10 30 77 5 14 20 21 11 17 17 0 8 20 29 26 23 33 22 54 3 32 6 14 17 0 0
OG0000089 1247 2 8 0 14 0 89 129 10 0 12 0 34 66 5 1 2 0 0 5 3 2 4 2 14 1 0 0 0 12 18 4 3 8 6 120 4 18 4 28 28 74 111 9 0 0 54 30 159 39 23 30 1 3 3 10 26 19 0 0