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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Aster-Orthologous

  Genes that are duplicated as concomitant events of species formation and continue to have the same function are called orthologous genes. New gene functions can be caused by duplications that occur within the genome of a single species. Duplications within a genome result in paralogous gene.
  Orthogroups, orthologs and paralogs genes were identified using OrthoFinder (v2.5.1). First, the similarity relationship between protein sequences of all species was based on the Blastp similarity score (E-value 1e-5). The sequence alignment program was blast_gz and the conformational tree method was FastTree. MCL graph clustering algorithm (Inflation value >1.5) was used for cluster analysis to obtain single-copy and multi-copy gene families.
Select Orthogroup Total Tree Image Download Aann Aary Amar Amtr Arla Armi Artr Bial Busi Cati Ccar Ceso Chla Chma Chmo Chna Cich Cien Cind Cobi Cpa Dapi Desu Ecan Enbr Eupl Fbi Fbr Ffl Fli Fra Fro Fso Ftr Glco Hean Hetu Heub Laca Lasa Lomi Lssa Mimi Nenu Nin Pdy Pin Pslu Sain Scae Sesq Smso Soca Stre Taer Tako Tamo Tesi Vivi
OG0000060 1619 49 17 4 57 20 23 95 39 14 16 12 31 60 80 97 91 8 9 24 22 11 36 15 41 8 5 14 18 20 11 13 12 12 12 30 104 9 10 21 21 14 17 7 11 38 17 19 54 38 42 49 25 20 25 8 13 14 10 7
OG0000061 1597 1 2 0 172 0 63 72 4 3 13 0 33 19 0 0 0 5 5 1 17 16 9 4 5 0 0 5 61 81 117 26 18 27 40 91 20 39 1 0 0 8 5 9 0 1 32 33 64 36 189 166 6 6 38 9 15 8 2 0
OG0000062 1554 3 0 0 19 0 138 100 3 0 2 0 19 0 0 0 0 19 5 0 30 3 10 38 13 0 0 0 11 36 16 5 10 64 194 48 0 20 1 0 0 16 0 15 0 0 158 215 109 117 20 58 9 3 1 9 7 10 0 0
OG0000063 1531 20 57 16 22 18 41 31 9 41 18 9 26 34 48 113 44 5 11 41 54 14 30 30 24 24 4 4 6 4 12 11 17 11 5 21 28 51 24 32 32 30 32 36 10 17 27 22 19 41 17 20 42 41 19 9 11 16 52 28
OG0000064 1513 4 6 0 6 0 5 17 10 0 0 0 4 12 0 3 1 3 4 13 16 3 25 0 1 0 0 3 184 117 92 152 62 382 265 6 2 23 2 1 1 0 4 12 0 1 1 2 23 4 3 3 19 1 2 4 1 8 0 0
OG0000065 1492 81 75 0 15 6 8 75 14 0 51 0 12 94 1 223 93 0 0 73 19 2 0 10 43 70 3 0 9 11 12 19 13 8 7 154 22 1 19 0 0 2 0 3 1 17 13 12 32 17 34 35 20 50 8 4 0 0 1 0
OG0000066 1491 23 44 30 27 19 20 19 55 11 25 18 15 28 26 65 25 21 20 22 25 15 60 28 23 21 14 20 19 16 21 26 31 20 22 18 34 81 15 18 18 30 21 29 17 12 17 18 19 18 25 19 53 35 29 24 24 14 18 11
OG0000067 1486 7 1 0 36 4 7 159 4 0 3 0 13 5 2 2 0 1 0 0 4 12 5 0 0 0 0 3 42 35 15 128 41 43 29 55 3 6 0 1 1 61 0 24 0 0 26 296 98 46 59 138 20 18 1 23 2 7 0 0
OG0000068 1450 30 61 20 27 17 30 14 23 0 58 10 48 28 40 51 15 34 9 14 11 2 19 28 23 32 0 8 2 1 7 6 8 7 7 12 17 22 38 73 81 21 82 48 1 12 23 47 18 9 40 35 25 36 43 20 34 23 0 0
OG0000069 1446 0 0 0 57 0 0 0 19 0 0 0 1 0 0 0 0 0 0 0 13 10 15 2 5 0 0 1 136 32 104 168 1 6 492 0 6 41 0 0 0 104 0 23 0 0 67 1 21 0 40 30 21 27 3 0 0 0 0 0