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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Aster-Orthologous

  Genes that are duplicated as concomitant events of species formation and continue to have the same function are called orthologous genes. New gene functions can be caused by duplications that occur within the genome of a single species. Duplications within a genome result in paralogous gene.
  Orthogroups, orthologs and paralogs genes were identified using OrthoFinder (v2.5.1). First, the similarity relationship between protein sequences of all species was based on the Blastp similarity score (E-value 1e-5). The sequence alignment program was blast_gz and the conformational tree method was FastTree. MCL graph clustering algorithm (Inflation value >1.5) was used for cluster analysis to obtain single-copy and multi-copy gene families.
Select Orthogroup Total Tree Image Download Aann Aary Amar Amtr Arla Armi Artr Bial Busi Cati Ccar Ceso Chla Chma Chmo Chna Cich Cien Cind Cobi Cpa Dapi Desu Ecan Enbr Eupl Fbi Fbr Ffl Fli Fra Fro Fso Ftr Glco Hean Hetu Heub Laca Lasa Lomi Lssa Mimi Nenu Nin Pdy Pin Pslu Sain Scae Sesq Smso Soca Stre Taer Tako Tamo Tesi Vivi
OG0000040 2035 22 22 5 32 2 119 100 19 62 137 8 41 46 12 7 9 9 9 7 20 14 23 17 18 0 16 11 19 28 34 25 25 36 26 67 23 37 8 38 39 24 147 22 0 9 54 164 56 100 46 37 14 43 21 21 31 46 4 4
OG0000041 1984 16 0 0 162 0 97 106 23 0 2 0 20 7 1 1 0 0 1 0 20 43 11 0 0 0 0 0 111 80 120 31 38 101 99 30 0 47 0 0 0 12 4 4 0 118 157 179 205 91 1 1 38 2 0 5 0 0 0 0
OG0000042 1960 9 76 0 50 0 102 135 1 2 9 0 34 27 2 1 0 10 8 6 12 54 6 19 15 0 0 7 84 98 107 36 50 58 31 82 18 14 6 1 1 24 38 32 1 9 86 58 91 91 197 64 15 22 18 12 13 16 1 1
OG0000043 1960 46 96 11 39 24 22 38 115 1 26 12 57 51 63 137 43 19 19 39 17 7 43 27 43 9 0 9 12 19 20 18 25 17 14 34 91 56 10 35 45 18 51 47 0 12 13 20 11 13 39 27 39 79 58 36 52 36 0 0
OG0000044 1959 24 91 8 69 56 12 140 4 0 117 0 27 152 49 305 41 5 6 17 13 8 12 9 1 43 3 6 13 15 53 11 10 11 12 26 19 13 12 58 59 0 83 8 0 34 14 34 38 47 19 9 1 51 37 22 22 9 1 0
OG0000045 1945 10 2 0 205 1 1 266 7 2 1 1 0 29 0 11 0 0 0 0 20 0 8 7 47 0 0 14 70 31 73 96 5 30 82 54 3 51 1 0 0 26 7 43 0 22 241 200 84 0 152 0 14 2 22 0 1 3 0 0
OG0000046 1912 21 101 22 16 22 18 97 56 0 86 5 20 98 163 96 88 17 15 33 7 4 15 21 38 31 0 2 11 19 8 10 10 7 14 2 44 15 25 47 52 22 45 67 4 5 27 24 18 9 88 1 60 84 39 17 35 7 0 4
OG0000047 1893 62 25 0 52 30 31 95 20 0 0 0 26 34 73 165 44 4 18 21 9 4 13 24 65 93 0 6 20 25 14 15 20 10 9 183 115 12 27 37 39 7 27 1 0 3 1 9 50 49 52 52 39 11 68 41 27 16 0 0
OG0000048 1878 14 2 7 151 62 66 158 25 0 32 11 22 75 69 79 37 2 3 8 9 13 18 6 2 37 0 2 40 49 85 5 4 19 9 52 64 20 11 19 19 8 20 33 0 0 16 37 74 93 30 28 71 50 16 12 49 35 0 0
OG0000049 1819 3 4 0 113 2 82 155 8 0 30 0 15 31 0 0 0 2 1 4 9 14 16 13 8 2 0 10 99 156 104 59 87 153 48 108 3 2 2 0 0 10 7 32 0 0 36 47 60 108 20 58 7 37 36 14 3 1 0 0