Hierarchical alignments with the <em>Vitis vinifera</em> genome as reference

Gene Search

Species

Gene ID

Example:

Or, Query Sequence

Example:

Aster-Orthologous

Genes that are duplicated as concomitant events of species formation and continue to have the same function are called orthologous genes. New gene functions can be caused by duplications that occur within the genome of a single species. Duplications within a genome result in paralogous gene.
Orthogroups, orthologs and paralogs genes were identified using OrthoFinder (v2.5.1). First, the similarity relationship between protein sequences of all species was based on the Blastp similarity score (E-value 1e-5). The sequence alignment program was blast_gz and the conformational tree method was FastTree. MCL graph clustering algorithm (Inflation value >1.5) was used for cluster analysis to obtain single-copy and multi-copy gene families.

Query Sequence

Or, Gene ID

Species

10 orthogroups on this page

Orthogroup	Total	Aann	Aary	Amar	Amtr	Arla	Armi	Artr	Bial	Busi	Cati	Ccar	Ceso	Chla	Chma	Chmo	Chna	Cich	Cien	Cind	Cobi	Cpa	Dapi	Desu	Ecan	Enbr	Eupl	Fbi	Fbr	Ffl	Fli	Fra	Fro	Fso	Ftr	Glco	Hean	Hetu	Heub	Laca	Lasa	Lomi	Lssa	Mimi	Nenu	Nin	Pdy	Pin	Pslu	Sain	Scae	Sesq	Smso	Soca	Stre	Taer	Tako	Tamo	Tesi	Vivi
OG0000100	1142	0	0	0	48	0	0	0	17	0	0	0	3	0	0	0	0	11	1	0	7	0	21	0	0	1	0	0	200	120	59	29	70	260	33	1	17	39	0	0	0	2	6	6	0	0	0	2	7	0	0	0	12	3	23	0	45	99	0	0
OG0000101	1133	32	5	0	52	8	4	173	0	0	20	0	10	17	2	7	10	1	1	1	1	14	0	0	1	3	0	1	15	8	4	17	26	14	4	41	1	9	2	1	1	47	1	19	0	0	14	269	130	3	41	54	6	21	3	1	3	15	0	0
OG0000102	1123	11	33	32	21	10	12	13	45	19	38	14	25	21	22	46	19	12	9	20	17	8	31	18	22	11	10	9	7	7	7	11	9	8	6	15	40	79	12	16	20	10	13	15	20	12	10	12	14	16	12	8	23	46	14	21	35	19	13	25
OG0000103	1121	28	152	1	3	12	21	94	5	0	24	7	7	68	37	289	58	2	2	11	4	3	7	1	16	10	1	2	3	3	4	3	3	3	1	57	3	10	10	3	3	12	4	1	0	22	12	25	6	6	33	2	7	4	1	2	4	4	1	4
OG0000104	1120	21	17	7	19	16	13	67	39	0	24	14	24	19	56	71	27	1	1	34	6	3	58	10	19	15	0	1	6	16	7	12	15	9	7	9	27	12	12	25	26	13	15	68	0	4	12	21	21	8	39	4	22	51	31	5	22	19	0	0
OG0000105	1114	3	0	0	31	0	98	32	1	0	11	0	34	9	0	0	0	2	2	1	3	77	11	8	1	0	1	9	55	78	57	23	30	88	14	54	19	16	1	0	0	5	14	60	0	22	22	14	54	38	51	13	6	7	24	11	1	3	0	0
OG0000106	1101	18	34	32	25	10	13	23	17	4	17	13	26	22	24	85	26	19	4	25	8	11	60	14	15	7	5	7	10	11	7	8	10	5	4	27	28	17	10	19	19	16	14	14	9	12	13	17	22	13	33	21	40	30	41	20	12	11	18	6
OG0000107	1096	31	50	36	44	0	0	46	14	0	0	0	0	37	1	118	60	0	0	53	12	2	11	27	25	21	0	4	8	11	10	13	13	10	6	72	71	21	48	0	0	4	0	5	0	0	15	24	18	0	13	38	22	25	35	22	0	0	0	0
OG0000108	1095	32	39	13	17	19	23	17	42	1	16	7	23	16	21	87	20	3	17	25	13	13	29	11	14	6	4	7	11	25	13	13	20	16	12	27	31	57	10	13	14	9	15	24	6	11	15	15	10	16	30	26	26	11	30	14	9	12	17	2
OG0000109	1085	8	43	0	0	6	2	59	6	0	4	0	0	172	123	15	8	7	2	70	0	0	11	20	0	2	0	0	1	1	1	1	0	0	0	164	0	1	0	28	28	5	1	1	0	0	0	0	23	4	12	3	19	5	0	0	88	141	0	0