Hierarchical alignments with the <em>Vitis vinifera</em> genome as reference

Gene Search

Species

Gene ID

Example:

Or, Query Sequence

Example:

Aster-Orthologous

Genes that are duplicated as concomitant events of species formation and continue to have the same function are called orthologous genes. New gene functions can be caused by duplications that occur within the genome of a single species. Duplications within a genome result in paralogous gene.
Orthogroups, orthologs and paralogs genes were identified using OrthoFinder (v2.5.1). First, the similarity relationship between protein sequences of all species was based on the Blastp similarity score (E-value 1e-5). The sequence alignment program was blast_gz and the conformational tree method was FastTree. MCL graph clustering algorithm (Inflation value >1.5) was used for cluster analysis to obtain single-copy and multi-copy gene families.

Query Sequence

Or, Gene ID

Species

10 orthogroups on this page

Orthogroup	Total	Aann	Aary	Amar	Amtr	Arla	Armi	Artr	Bial	Busi	Cati	Ccar	Ceso	Chla	Chma	Chmo	Chna	Cich	Cien	Cind	Cobi	Cpa	Dapi	Desu	Ecan	Enbr	Eupl	Fbi	Fbr	Ffl	Fli	Fra	Fro	Fso	Ftr	Glco	Hean	Hetu	Heub	Laca	Lasa	Lomi	Lssa	Mimi	Nenu	Nin	Pdy	Pin	Pslu	Sain	Scae	Sesq	Smso	Soca	Stre	Taer	Tako	Tamo	Tesi	Vivi
OG0000110	1084	50	42	9	16	2	4	43	35	0	7	0	2	39	36	149	43	0	0	27	14	1	14	10	36	63	0	0	1	0	0	0	0	0	0	68	41	13	14	0	0	10	0	3	0	0	10	18	30	1	38	59	11	98	21	6	0	0	0	0
OG0000111	1084	2	1	0	137	0	0	9	8	0	1	2	3	5	6	0	0	1	1	0	9	20	11	4	27	0	0	0	59	82	102	44	11	61	60	1	0	7	2	2	2	6	38	33	0	1	8	96	44	8	10	48	4	44	37	16	2	9	0	0
OG0000112	1081	0	0	2	18	18	12	3	27	0	71	1	11	11	20	10	3	4	6	1	9	22	42	18	3	30	0	2	14	18	34	19	35	37	11	10	48	54	1	41	42	4	16	63	0	0	25	38	18	10	22	5	28	9	24	26	47	38	0	0
OG0000113	1080	5	14	2	18	0	111	41	6	16	49	1	43	17	4	3	4	5	3	3	3	22	11	8	27	1	23	3	5	12	16	6	10	14	7	42	2	17	7	11	11	10	73	4	3	7	41	86	29	103	19	21	4	23	5	4	8	22	14	1
OG0000114	1080	0	0	0	71	0	84	74	3	0	1	0	7	3	0	0	0	0	0	1	6	2	12	0	0	0	4	0	42	81	75	30	34	43	61	81	3	29	1	0	0	13	3	9	0	4	10	105	43	41	19	54	3	0	13	6	5	4	0	0
OG0000115	1079	8	12	12	47	34	20	45	16	0	20	1	8	38	61	73	17	3	5	33	18	0	9	7	7	53	0	7	3	3	12	4	23	9	8	55	26	28	5	31	36	0	35	37	0	1	18	10	10	30	18	0	7	47	8	31	18	12	0	0
OG0000116	1074	23	32	0	17	12	13	24	98	21	23	10	17	34	53	79	35	5	6	28	5	5	5	4	22	13	0	6	14	19	6	7	11	18	9	36	52	15	7	9	9	9	8	9	9	9	8	7	10	23	28	28	41	11	28	3	4	8	24	5
OG0000117	1072	13	17	10	19	3	14	20	17	22	13	11	24	24	40	55	21	22	7	30	22	14	29	16	11	15	3	6	6	13	15	23	18	29	18	43	34	38	7	26	26	19	26	16	6	9	21	9	17	17	10	9	19	14	15	14	14	11	26	6
OG0000118	1067	15	32	15	17	12	16	45	36	24	16	7	22	37	32	84	30	9	5	29	12	13	30	20	14	11	7	9	9	13	6	11	12	11	12	29	23	17	19	22	23	14	20	11	5	4	9	11	18	7	16	17	30	28	14	14	8	10	19	6
OG0000119	1061	15	31	32	13	14	10	13	34	16	48	19	14	23	28	46	18	14	9	23	17	3	23	16	19	23	7	8	6	5	9	10	11	8	11	11	31	66	12	11	15	13	22	13	10	7	7	9	13	14	17	17	26	60	13	10	28	9	12	19