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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Hierarchical alignments with the Arctium lappa genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Asteraceae genomes. We used Arctium lappa as a reference, and by comparing homologous gene locus maps and Ks values between Arctium lappa and other Asteraceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes.
  The relevant gene ids can be obtained from the Asteraceae blast and match under the Tools module. This link is Asteraceae blast and match.


Select Armi_1 Sain_1 Ceso_1 Cati_1 Ccar_1 Cien_1 Cich_1 Lssa_1 Laca_1 Tako_1 Tamo_1 Pslu_1 Lomi_1 Lomi_2 Enbr_1 Ecan_1 Soca_1 Glco_1 Artr_1 Aary_1 Aary_2 Aann_1 Chma_1 Chmo_1 Chmo_2 Chmo_3 Chla_1 Chna_1 Cind_1 Pdy_1 Cobi_1 Hean_1 Bial_1 Bial_2 Dapi_1 Dapi_2 Hetu_1 Hetu_2 Hetu_3 Amtr_1 Smso_1 Smso_2 Taer_1 Fro_1 Fso_1 Ftr_1 Fra_1 Fli_1 Stre_1 Mimi_1 Cobi_2 Hean_2 Bial_3 Bial_4 Dapi_3 Dapi_4 Hetu_4 Hetu_5 Hetu_6 Amtr_2 Smso_3 Smso_4 Taer_2 Fro_2 Fso_2 Ftr_2 Fra_2 Fli_2 Stre_2 Mimi_2
. Sain12g00029 Ceso2g03171 . . . . . . . . . . . . . . . . . . . Chma7g07713 Chmo13g00994 . Chmo15g00871 . Chna2g00836 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Armi1g00021 Sain12g00031 . Cati3g00028 . Cien5g03450 Cich4g04753 Lssa7g03706 Laca7g03016 Tako4g03587 Tamo4g02523 Pslu1g20901 . Lomi2g04246 . Ecan3g02361 Soca5g02241 Glco3g01394 Artr3g11007 Aary5g02655 Aary13g03175 Aann4g00870 . Chmo13g00999 Chmo14g00939 . Chla6g05676 Chna2g00839 Cind3g02150 Pdy4g00758 Cobi6g01433 Hean15g04038 Bial24g02140 Bial12g02282 . . Hetu17g02346 Hetu16g02486 Hetu18g02645 Amtr02g04180 . . . . . . . . . . . Hean11g01657 . . . . Hetu32g00915 . Hetu33g00977 . . Smso29g00571 . . . . . . . .
Armi1g00023 Sain12g00032 Ceso2g03172 Cati3g00031 . Cien5g03452 Cich4g04754 Lssa7g03707 Laca7g03017 . . Pslu1g20900 Lomi1g00412 Lomi2g04245 . Ecan3g02362 Soca5g02240 Glco3g01397 Artr3g11005 Aary5g02654 Aary13g03174 Aann4g00869 . Chmo13g01000 Chmo14g00940 . . Chna2g00840 Cind3g02149 Pdy4g00759 Cobi6g01434 Hean15g04040 Bial24g02139 Bial12g02281 . . Hetu17g02341 Hetu16g02483 Hetu18g02642 Amtr02g04181 . . . . . . . . . . Cobi4g02879 Hean11g01647 Bial4g03157 Bial16g02554 Dapi7g00483 Dapi23g00501 Hetu32g00925 Hetu31g00880 Hetu33g00984 Amtr02g06651 Smso7g00443 Smso29g00581 Taer1g05849 Fro12g02213 Fso2g00401 . Fra11g02391 Fli1g00460 Stre6g00603 Mimi17g00668
Armi1g00024 Sain12g00033 Ceso2g03173 . . Cien5g03455 Cich4g04756 Lssa7g03709 Laca7g03018 Tako4g03585 . Pslu1g20896 Lomi1g00413 Lomi2g04244 . Ecan3g02364 . Glco3g01399 Artr3g11002 Aary5g02653 Aary13g03173 Aann4g00868 Chma7g07705 Chmo13g01001 Chmo14g00941 Chmo15g00876 Chla6g05737 Chna2g00841 Cind3g02147 Pdy4g00762 . . . . . . . . . . . . . . . . . . . . Cobi4g02872 Hean11g01646 Bial4g03153 Bial16g02552 Dapi7g00484 Dapi23g00502 Hetu32g00926 . Hetu33g00990 Amtr02g06650 Smso7g00444 Smso29g00582 . . . . . . Stre6g00609 .
Armi1g00026 Sain12g00034 Ceso2g03175 Cati3g00033 . . . . . . . Pslu1g20889 . Lomi2g04240 . Ecan3g02368 Soca5g02234 . . . . . . Chmo13g01006 Chmo14g00947 Chmo15g00888 Chla6g05731 Chna2g00844 Cind3g02142 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Armi1g00027 Sain12g00035 Ceso2g03176 . . . . . . . . Pslu1g20887 Lomi1g00416 Lomi2g04239 . Ecan3g02369 Soca5g02232 . . . . . . Chmo13g01007 Chmo14g00948 Chmo15g00889 . Chna2g00845 Cind3g02141 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Armi1g00028 Sain12g00036 Ceso2g03177 Cati3g00035 . . . . . . . Pslu1g20886 Lomi1g00417 Lomi2g04238 . Ecan3g02370 Soca5g02231 . . . . . . Chmo13g01008 Chmo14g00949 Chmo15g00890 Chla6g05729 Chna2g00846 Cind3g02140 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Armi1g00035 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Armi1g00036 Sain12g00043 . Cati3g00044 . . . . . . . Pslu1g20850 Lomi1g00418 Lomi2g04235 . Ecan3g02377 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Armi1g00037 Sain12g00044 Ceso2g03179 Cati3g00047 . . . . . . . Pslu1g20849 Lomi1g00421 Lomi2g04234 . Ecan3g02378 Soca5g02228 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
Gene_GFF
Select Chromosome Start End Strand Old_gene Gene Num
4 52184708 52187613 - chr4g0768531 Aann4g00868 868
4 52192582 52198383 - chr4g0768541 Aann4g00869 869
4 52208056 52211767 - chr4g0768561 Aann4g00870 870
5 153075799 153078393 - Aargg5g26530.1 Aary5g02653 2653
5 153099408 153101459 - Aargg5g26540.1 Aary5g02654 2654
5 153107042 153110284 - Aargg5g26550.1 Aary5g02655 2655
13 188127930 188130463 - Aargg13g31730.1 Aary13g03173 3173
13 188136518 188138618 - Aargg13g31740.1 Aary13g03174 3174
13 188207462 188212472 - Aargg13g31750.1 Aary13g03175 3175
2 82779823 82780975 + AtrifAMIRv0_Chr02g0137761 Amtr02g04180 4180
2 82798534 82800732 + AtrifAMIRv0_Chr02g0137771 Amtr02g04181 4181
2 120121478 120124209 - AtrifAMIRv0_Chr02g0162461 Amtr02g06650 6650
2 120130141 120132765 - AtrifAMIRv0_Chr02g0162471 Amtr02g06651 6651
1 350433 351237 + AmiAMIRv0_Chr01g0000211 Armi1g00021 21
1 437580 439465 + AmiAMIRv0_Chr01g0000231 Armi1g00023 23
1 456564 465057 + AmiAMIRv0_Chr01g0000241 Armi1g00024 24
1 763120 768048 - AmiAMIRv0_Chr01g0000261 Armi1g00026 26
1 772481 773531 + AmiAMIRv0_Chr01g0000271 Armi1g00027 27
1 773715 784280 - AmiAMIRv0_Chr01g0000281 Armi1g00028 28
1 816650 818449 + AmiAMIRv0_Chr01g0000351 Armi1g00035 35
1 818944 824924 - AmiAMIRv0_Chr01g0000361 Armi1g00036 36
1 826577 828820 + AmiAMIRv0_Chr01g0000371 Armi1g00037 37
3 370646227 370648861 - AtridAMIRv0_Chr03g0417381 Artr3g11002 11002
3 370770440 370772369 - AtridAMIRv0_Chr03g0417411 Artr3g11005 11005
3 370812226 370813638 - AtridAMIRv0_Chr03g0417431 Artr3g11007 11007
4 72201616 72204565 - g42992.t1 Bial4g03153 3153
4 72274667 72277094 - g42996.t1 Bial4g03157 3157
12 53110036 53111821 - g35480.t1 Bial12g02281 2281
12 53116003 53118627 - g35481.t1 Bial12g02282 2282
16 66118987 66124545 - g150030.t1 Bial16g02552 2552
16 66137540 66140040 - g150028.t1 Bial16g02554 2554
24 51957487 51960651 - g67805.t1 Bial24g02139 2139
24 51963787 51966274 - g67806.t1 Bial24g02140 2140
3 192857 195733 + CtAH03T0001400.1 Cati3g00028 28
3 202819 204454 + CtAH03T0001500.1 Cati3g00031 31
3 217031 220835 - CtAH03T0001700.1 Cati3g00033 33
3 222480 230761 - CtAH03T0001800.2 Cati3g00035 35
3 239820 247195 - CtAH03T0002100.1 Cati3g00044 44
3 247625 250437 + CtAH03T0002300.2 Cati3g00047 47
2 80361043 80365441 + >KAJ9562798.1 Ceso2g03171 3171
2 80379164 80380895 + >KAJ9562797.1 Ceso2g03172 3172
2 80401298 80404203 + >KAJ9562609.1 Ceso2g03173 3173
2 80408540 80411471 - >KAJ9562613.1 Ceso2g03175 3175
2 80412959 80414055 + >KAJ9562615.1 Ceso2g03176 3176
2 80414292 80422748 - >KAJ9562614.1 Ceso2g03177 3177
2 80444119 80445462 + >KAJ9562607.1 Ceso2g03179 3179
6 224899918 224901079 + ClaG1_Chr06g0429231 Chla6g05676 5676
6 227067821 227073445 - ClaG1_Chr06g0429761 Chla6g05729 5729
6 227132107 227137249 + ClaG1_Chr06g0429781 Chla6g05731 5731
6 227272397 227274980 - ClaG1_Chr06g0429841 Chla6g05737 5737
7 263700849 263703244 + CmaNakai_Chr07g0700071 Chma7g07705 7705
7 263984708 263990633 - CmaNakai_Chr07g0700151 Chma7g07713 7713
13 51971178 51977170 + evm.model.scaffold_1389.40 Chmo13g00994 994
13 52257257 52258439 + evm.model.scaffold_1389.22 Chmo13g00999 999
13 52311635 52313983 + evm.model.scaffold_1389.18 Chmo13g01000 1000
13 52369179 52371677 + evm.model.scaffold_1389.16 Chmo13g01001 1001
13 52551618 52556501 - evm.model.scaffold_1389.6 Chmo13g01006 1006
13 52653617 52654280 + evm.model.scaffold_1389.3 Chmo13g01007 1007
13 52655009 52660549 - evm.model.scaffold_1389.2 Chmo13g01008 1008
14 46694790 46698014 + evm.model.scaffold_25.70 Chmo14g00939 939
14 46752065 46754426 + evm.model.scaffold_25.62 Chmo14g00940 940
14 46799030 46802085 + evm.model.scaffold_25.61 Chmo14g00941 941
14 47002360 47009396 - evm.model.scaffold_25.50 Chmo14g00947 947
14 47114288 47115276 + evm.model.scaffold_25.42 Chmo14g00948 948
14 47115900 47116924 - evm.model.scaffold_25.41 Chmo14g00949 949
15 50027371 50033471 + evm.model.scaffold_25.100 Chmo15g00871 871
15 50576089 50578822 + evm.model.scaffold_490.260 Chmo15g00876 876
15 50946217 50951753 - evm.model.scaffold_490.241 Chmo15g00888 888
15 51087720 51088708 + evm.model.scaffold_490.232 Chmo15g00889 889
15 51089160 51094688 - evm.model.scaffold_490.231 Chmo15g00890 890
2 64486064 64490452 + Cn0229960 Chna2g00836 836
2 64750065 64751467 + Cn0229880 Chna2g00839 839
2 64822642 64824564 + Cn0229870 Chna2g00840 840
2 64906607 64909565 + Cn0229850 Chna2g00841 841
2 65322565 65327586 - Cn0229770 Chna2g00844 844
2 65361116 65361900 + Cn0229750 Chna2g00845 845
2 65362335 65368257 - Cn0229740 Chna2g00846 846
4 136077509 136078218 + KAI3753888.1 Cich4g04753 4753
4 136112684 136114311 + KAI3753889.1 Cich4g04754 4754
4 136142714 136144215 + KAI3753891.1 Cich4g04756 4756
5 80592691 80593303 + KAI3509970.1 Cien5g03450 3450
5 80601186 80602648 + KAI3509972.1 Cien5g03452 3452
5 80615738 80617556 + KAI3509975.1 Cien5g03455 3455
3 316332213 316338314 + D.indicum_Contig21_G00184.t1 Cind3g02140 2140
3 316339782 316340370 - D.indicum_Contig21_G00185.t1 Cind3g02141 2141
3 316430106 316434365 + D.indicum_Contig21_G00186.t1 Cind3g02142 2142
3 316648123 316650546 - D.indicum_Contig21_G00191.t1 Cind3g02147 2147
3 316715095 316716853 - D.indicum_Contig21_G00193.t1 Cind3g02149 2149
3 316776414 316780104 - D.indicum_Contig21_G00194.t1 Cind3g02150 2150
4 77104861 77109124 - h2tg000009l_1.g42407.t1 Cobi4g02872 2872
4 77169272 77171757 - h2tg000009l_1.g42400.t1 Cobi4g02879 2879
6 11600163 11601726 + h2tg000021l_1.g11243.t1 Cobi6g01433 1433
6 11605098 11606924 + h2tg000021l_1.g11242.t1 Cobi6g01434 1434
7 10660843 10663088 + h1tg000030l.g77073.t1 Dapi7g00483 483
7 10671245 10673791 + h1tg000030l.g77074.t1 Dapi7g00484 484
23 11270775 11273413 + h2tg000020l.g165198.t1 Dapi23g00501 501
23 11279793 11283621 + h2tg000020l.g165197.t1 Dapi23g00502 502
3 34184067 34186861 + XM_043764575.1 Ecan3g02361 2361
3 34197547 34199361 + XM_043763534.1 Ecan3g02362 2362
3 34201963 34205619 + XM_043765908.1 Ecan3g02364 2364
3 34229178 34234917 - XM_043766889.1 Ecan3g02368 2368
3 34236608 34237415 + XM_043766890.1 Ecan3g02369 2369
3 34237408 34244911 - XM_043766888.1 Ecan3g02370 2370
3 34272924 34278133 - XM_043765204.1 Ecan3g02377 2377
3 34281796 34286176 + XM_043766124.1 Ecan3g02378 2378
1 9701763 9703924 - FliAMIRv0_Chr01g0004551 Fli1g00460 460
11 77565555 77568228 + FraAMIRv0_Chr11g0224131 Fra11g02391 2391
12 29466290 29468716 + FroAMIRv0_Chr12g0217611 Fro12g02213 2213
2 5576088 5578463 - FsoAMIRv0_Chr02g0032201 Fso2g00401 401
3 89096766 89097700 + GcoAMIRv0_Chr03g0170231 Glco3g01394 1394
3 89236570 89239439 + GcoAMIRv0_Chr03g0170261 Glco3g01397 1397
3 89327520 89330030 + GcoAMIRv0_Chr03g0170281 Glco3g01399 1399
11 50365642 50368106 - gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr11g0485301 Hean11g01646 1646
11 50396547 50411579 - gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr11g0485311 Hean11g01647 1647
11 50711353 50719763 + gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr11g0485431 Hean11g01657 1657
15 158367580 158371405 + gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr15g0717721 Hean15g04038 4038
15 158449611 158451803 + gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr15g0717741 Hean15g04040 4040
16 130496058 130497498 - >Htub.h1tg000461l.g350.t1 Hetu16g02483 2483
16 130667049 130668626 - >Htub.h1tg000461l.g347.t1 Hetu16g02486 2486
17 121696834 121698963 - >Htub.h1tg000611l.g218.t1 Hetu17g02341 2341
17 122341444 122355815 + >Htub.h1tg000611l.g213.t1 Hetu17g02346 2346
18 129058874 129061000 - >Htub.h1tg000500l.g425.t1 Hetu18g02642 2642
18 129708492 129722858 + >Htub.h1tg000500l.g422.t1 Hetu18g02645 2645
31 40049120 40051197 + >Htub.h1tg002121l.g110.t1 Hetu31g00880 880
32 43574395 43575161 - >Htub.h1tg000795l.g160.t1 Hetu32g00915 915
32 43814125 43821160 + >Htub.h1tg000795l.g170.t1 Hetu32g00925 925
32 43826882 43830152 + >Htub.h1tg000795l.g171.t1 Hetu32g00926 926
33 42427246 42428018 - >Htub.h1tg001052l.g389.t1 Hetu33g00977 977
33 42574629 42577080 + >Htub.h1tg001052l.g382.t1 Hetu33g00984 984
33 42661134 42663114 + >Htub.h1tg001052l.g376.t1 Hetu33g00990 990
7 144152188 144154249 + CAI9295212.1 Laca7g03016 3016
7 144205478 144207502 + CAI9295213.1 Laca7g03017 3017
7 144276332 144278847 - CAI9295214.1 Laca7g03018 3018
1 3741020 3742858 + LmiAMIRv0_Chr01g0004121 Lomi1g00412 412
1 3753827 3757712 + LmiAMIRv0_Chr01g0004131 Lomi1g00413 413
1 3775734 3776529 + LmiAMIRv0_Chr01g0004161 Lomi1g00416 416
1 3776844 3782635 - LmiAMIRv0_Chr01g0004171 Lomi1g00417 417
1 3793504 3798488 - LmiAMIRv0_Chr01g0004181 Lomi1g00418 418
1 3803904 3805204 + LmiAMIRv0_Chr01g0004211 Lomi1g00421 421
2 47764251 47767910 - LmiAMIRv0_Chr02g0087671 Lomi2g04234 4234
2 47776007 47780845 + LmiAMIRv0_Chr02g0087681 Lomi2g04235 4235
2 47803312 47809521 + LmiAMIRv0_Chr02g0087711 Lomi2g04238 4238
2 47809836 47810524 - LmiAMIRv0_Chr02g0087721 Lomi2g04239 4239
2 47814895 47819219 + LmiAMIRv0_Chr02g0087731 Lomi2g04240 4240
2 47830619 47833273 - LmiAMIRv0_Chr02g0087771 Lomi2g04244 4244
2 47840460 47842370 - LmiAMIRv0_Chr02g0087781 Lomi2g04245 4245
2 47847302 47848477 - LmiAMIRv0_Chr02g0087791 Lomi2g04246 4246
7 196223646 196225685 + >KAJ0197942.1 Lssa7g03706 3706
7 196274400 196277099 + >KAJ0195431.1 Lssa7g03707 3707
7 196426722 196429142 + >KAJ0195751.1 Lssa7g03709 3709
17 32700961 32704271 + KAD3066990.1 Mimi17g00668 668
4 13732713 13734149 + PdyAMIRv0_Chr04g0155651 Pdy4g00758 758
4 13740812 13742366 + PdyAMIRv0_Chr04g0155661 Pdy4g00759 759
4 13767089 13771138 + PdyAMIRv0_Chr04g0155691 Pdy4g00762 762
1 150203105 150206498 - PluAMIRv0_Chr01g0207571 Pslu1g20849 20849
1 150210822 150215371 + PluAMIRv0_Chr01g0207581 Pslu1g20850 20850
1 150436917 150442723 + PluAMIRv0_Chr01g0207941 Pslu1g20886 20886
1 150443048 150443837 - PluAMIRv0_Chr01g0207951 Pslu1g20887 20887
1 150464144 150469530 + PluAMIRv0_Chr01g0207971 Pslu1g20889 20889
1 150485608 150488190 - PluAMIRv0_Chr01g0208041 Pslu1g20896 20896
1 150523687 150525663 - PluAMIRv0_Chr01g0208081 Pslu1g20900 20900
1 150530440 150532046 - PluAMIRv0_Chr01g0208091 Pslu1g20901 20901
12 316376 320859 + SinAMIRv0_Chr12g0355941 Sain12g00029 29
12 372900 373684 + SinAMIRv0_Chr12g0355961 Sain12g00031 31
12 375194 376827 + SinAMIRv0_Chr12g0355971 Sain12g00032 32
12 417988 421180 + SinAMIRv0_Chr12g0355981 Sain12g00033 33
12 433957 437472 - SinAMIRv0_Chr12g0355991 Sain12g00034 34
12 438763 439800 + SinAMIRv0_Chr12g0356001 Sain12g00035 35
12 439990 447277 - SinAMIRv0_Chr12g0356011 Sain12g00036 36
12 508396 511831 - SinAMIRv0_Chr12g0356081 Sain12g00043 43
12 512864 515012 + SinAMIRv0_Chr12g0356091 Sain12g00044 44
7 7556418 7559366 + KAI3810023.1 Smso7g00443 443
7 7577063 7579989 + KAI3810024.1 Smso7g00444 444
29 8379415 8382655 - KAI3675565.1 Smso29g00571 571
29 8488106 8490377 + KAI3675575.1 Smso29g00581 581
29 8510348 8513333 + KAI3675576.1 Smso29g00582 582
5 23782781 23787328 - augustus16482.t01 Soca5g02228 2228
5 23808765 23816971 + augustus16485.t02 Soca5g02231 2231
5 23817101 23817901 - transfrag10925.t01 Soca5g02232 2232
5 23821449 23827759 + transfrag10926.t02 Soca5g02234 2234
5 23864843 23867482 - transfrag10929.t01 Soca5g02240 2240
5 23884962 23887720 - transfrag10930.t01 Soca5g02241 2241
6 16948160 16952499 + Streb.6G006030.1 Stre6g00603 603
6 17279983 17283421 + Streb.6G006090.1 Stre6g00609 609
1 52922534 52924616 + >KAK1440024.1 Taer1g05849 5849
4 79145822 79148231 - TkA04G314210.3 Tako4g03585 3585
4 79158810 79160402 - TkA04G314240.1 Tako4g03587 3587
4 46766472 46767746 - TbA04G038370.1 Tamo4g02523 2523
       
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