AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ecan3g02368 ATGATGAAAATATTCAAGAAAGACCTAGGATTATCAACTGATCATTTTTATGAAATTAGAGCTGGATGCAACACAGATGATGTTTTTGATACTAAATTTAAAATTAAGGCTGGGAAGACTCTAAGTGAGAAAAGGTGGCGTGCTGCGTTCAAAACTGGAGGTTCTCTTGATATAGGCAAGTGCCTTAACAGAATCTATCATGGAGGGATTCATCCATCGATTAGAGGAGAAGTGTGGGAGTTTTTGCTAGGTTGTTATGATCCTAAAAGCACATTCGATGAACGAGAAGAAATACGACATAGACGAAGAGAGCAATACGCTGAGCTGAAAAGATCATGCAGTAACATGTTTCCTGTTGTTGGAAGCGGAAAGTTCGTCACTGCTCGTGTTATTGCAGCAAATGGTGATCCAATTCAAGATCCCATTGTACTTTTAGGGACAAATCTTGAAAGTATTCCCCCACAATCACAAGAAAGTGTTAGTCTGAATCAAGCCACATTGGTTAATCGGGAGCATGATAAGGAAATAATACAATGGAAGCTTGCTCTACATCAAATAGGTCTTGATGTAGTTCGCACGGACAGGACACTAATGTTTTACGAGAAACAAGATAATCTGGCAAAACTTTGGGATGTTCTTGCTGTCTATGCTTGGCATGATAAAGATGTTGGTTATGGGCAAGGGATGAGTGATATATGCTCCCCGATGATTATGCTTTATGAAAATGAAGCAGATGCATTTTGGTGCTTTGAACGTGTAATGCGCAGACTGCGAGGTAATTTCAGGTGCACGGGCAACTCTGTGGGGGTTGAGGCTCAACTTGATAACTTGGCTAATGTTACTCGAGCTGTTAATCCTAAACTTCACCTTCATTTAGAGCACCTTGGTGGAGGCGGTTATCTATTTGCATTCCGGATGCTTATGGTATTGTTCAGGCGAGAATTAGCTTTTGGAGATGCATTGTACTTGTGGGAGATGATGTGGGCTTTGGAGTATAATCCCGAGCAGTTTGCATTATATGAGGGAGGTGAAACCCACAAGAAATCTGATGTAACACGAAAATTCAGACGCCAATATGGCAAGTACGCAAGAGCAAATAGAAAAAATAAGTCACGGGCCAGAGGCAAGCCTGAAACTGGCGCCCCACTTCCCTTTTCTATTTTTCTTGTAGCAAGTGTCCTCAAGGACAGGAGTGACAAGTTATTAAAAGAAGCCAGGGGGCTGGACGACGTTGTAAAGATATTGAACGACATTTCTGGCCATATGGATGCAAAAAAAGTTTGCATAGGGGCAATGAAGATTCACAAGAAGTATCTAAAAAGGAAATAA 1329 41.16 MMKIFKKDLGLSTDHFYEIRAGCNTDDVFDTKFKIKAGKTLSEKRWRAAFKTGGSLDIGKCLNRIYHGGIHPSIRGEVWEFLLGCYDPKSTFDEREEIRHRRREQYAELKRSCSNMFPVVGSGKFVTARVIAANGDPIQDPIVLLGTNLESIPPQSQESVSLNQATLVNREHDKEIIQWKLALHQIGLDVVRTDRTLMFYEKQDNLAKLWDVLAVYAWHDKDVGYGQGMSDICSPMIMLYENEADAFWCFERVMRRLRGNFRCTGNSVGVEAQLDNLANVTRAVNPKLHLHLEHLGGGGYLFAFRMLMVLFRRELAFGDALYLWEMMWALEYNPEQFALYEGGETHKKSDVTRKFRRQYGKYARANRKNKSRARGKPETGAPLPFSIFLVASVLKDRSDKLLKEARGLDDVVKILNDISGHMDAKKVCIGAMKIHKKYLKRK 442
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ecan3g02368 442 Gene3D - 267 442 - -
Ecan3g02368 442 SUPERFAMILY Ypt-Rab-GAP domain of gyp1p 48 291 IPR035969 -
Ecan3g02368 442 SUPERFAMILY Ypt-Rab-GAP domain of gyp1p 269 438 IPR035969 -
Ecan3g02368 442 Gene3D putative rabgap domain of human tbc1 domain family member 14 like domains 156 261 - -
Ecan3g02368 442 SMART tbc-4 66 353 IPR000195 -
Ecan3g02368 442 Pfam Rab-GTPase-TBC domain 161 331 IPR000195 -
Ecan3g02368 442 FunFam TBC1 domain family member 15-like 163 261 - -
Ecan3g02368 442 ProSiteProfiles TBC-rab GAP domain profile. 69 331 IPR000195 -
Ecan3g02368 442 PANTHER TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN 60 417 - GO:0005096(PANTHER)|GO:0090630(PANTHER)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ecan3g02368 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
84930 Ecan3g02368 Ecan5g01830
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
2107924 Ecan Ecan3g02368 Ecan-Chr3:34229178 Ecan9g00767 Ecan-Chr9:6484849
2143071 Ecan Ecan3g02368 Ecan-Chr3:34229178 Ecan5g01830 Ecan-Chr5:31903358