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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aary13g03174 ATGGCATCAATGACAACAACTTTCACCTCACCACTCTACACCAAAACCCAATCATCTTTCCATGGAGTCCCAGTCACATCACCTTTTAGAATGATCCAACCATGCAGATCCAACAAAACAAACAACACACCCATTACCATGTCATATGATCTTGGATCATTCACGTTCCAACCAATTAAGGAAGCTATTGTGTCACGTGAAATGACTAGGAGGTACATGACTGACATGATTACTTATGCTGATACTGATGTTGTTGTTGTTGGTGCTGGATCTGCTGGTTTGTCTTGTGCTTATGAGCTTAGCAAAAACCCTAACGTTCAGGTAGCTATCATTGAGCAATCCGTGAGCCCTGGTGGTGGTGCATGGTTAGGTGGACAACTATTCTCAGCAATGGTTGTCCGCAAGCCTGCCCACCACTTCCTTGACGAGCTCGAGATCGAGTACGACGAGCAAGAAGACTACGTCGTCATCAAGCACGCTGCTTTGTTCACATCCACAATCATGAGCAAGCTTTTGGCTAGGCCAAATGTCAAGCTCTTCAACGCGGTTGCAGCTGAGGACTTGATCATCAAGGGAGGAAGAGTAGGTGGTGTTGTGACCAACTGGTCTTTGGTCGCACAGAATCACGACACACAATCATGCATGGACCCTAATGTTATGGAGGCTAAGGTTGTTGTCAGCTCGTGTGGCCATGATGGGCCCATGGGCGCTACTGGTGTTAAGAGGCTTAGGAGTGTTGGCCTGATCGATAGCGTTCCTGGGATGAAGGCTCTCGACATGAACGCTGCTGAAGATGCGATTGTGAAGCTGACTAGAGAGATTGTTCCTGGTATGGTCGTTACCGGGATGGAAGTTGCTGAGATCGATGGATCTCCCAGGATGGGGCCAACTTTTGGTGCTATGATGATATCAGGACAGAAGGCGGCTCATTTGGCCTTGAAGGCGTTGGGACTCCCAAATGCATTGGATGGAACATTGGTGGGAAGCCTCCACCCTGAGCTTATCCTGGCTGCTGCCGACTCTAGCGAGACTGTTGACGCCTAA 1044 48.75 MASMTTTFTSPLYTKTQSSFHGVPVTSPFRMIQPCRSNKTNNTPITMSYDLGSFTFQPIKEAIVSREMTRRYMTDMITYADTDVVVVGAGSAGLSCAYELSKNPNVQVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHHFLDELEIEYDEQEDYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIIKGGRVGGVVTNWSLVAQNHDTQSCMDPNVMEAKVVVSSCGHDGPMGATGVKRLRSVGLIDSVPGMKALDMNAAEDAIVKLTREIVPGMVVTGMEVAEIDGSPRMGPTFGAMMISGQKAAHLALKALGLPNALDGTLVGSLHPELILAAADSSETVDA 347
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aary13g03174 347 PRINTS Adrenodoxin reductase family signature 83 105 - -
Aary13g03174 347 PRINTS Adrenodoxin reductase family signature 251 264 - -
Aary13g03174 347 PRINTS Adrenodoxin reductase family signature 107 120 - -
Aary13g03174 347 Pfam Thi4 family 65 298 - -
Aary13g03174 347 PANTHER THIAMINE THIAZOLE SYNTHASE 11 346 - -
Aary13g03174 347 Hamap Thiamine thiazole synthase, chloroplastic [THI4]. 2 325 IPR027495 GO:0009228(InterPro)
Aary13g03174 347 SUPERFAMILY FAD-NAD(P)-binding domain 44 309 IPR036188 -
Aary13g03174 347 Gene3D - 50 80 - -
Aary13g03174 347 FunFam Thiamine thiazole synthase, chloroplastic 81 316 - -
Aary13g03174 347 NCBIfam sulfide-dependent adenosine diphosphate thiazole synthase 61 316 IPR002922 -
Aary13g03174 347 Gene3D - 81 316 IPR036188 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aary13g03174 K03146 cysteine-dependent adenosine diphosphate thiazole synthase [EC:2.4.2.60]
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Event-related genes

Select Gene_1 Gene_2 Event_name
6310 Aary13g03174 Aary15g00593
6311 Aary13g03174 Aary7g00708
174904 Aary5g02654 Aary13g03174
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
106609 Aary Aary11g03095 Aary-Chr11:179815084 Aary13g03174 Aary-Chr13:188136518
133838 Aary Aary13g03174 Aary-Chr13:188136518 Aary15g00593 Aary-Chr15:28229341
135494 Aary Aary13g03174 Aary-Chr13:188136518 Aary5g02654 Aary-Chr5:153099408
136742 Aary Aary13g03174 Aary-Chr13:188136518 Aary7g00708 Aary-Chr7:36206717