AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Fso2g00401 ATGGCTACAGCCTTCGCATCATCTCCTTCCACCAAGGCCAAAACCTCTTTCGTCGATCACTCATCCTTCCATGGCGTTCCGGTGACATCTCCGGTCCGAATCCAACCGGTCAAATCGAACCCGAACCGGAACATGCCGATCACTATGTCCGCTGCTCCGTACGATCTCGGATCCTTCACCTTTCAACCGATCAAAGAGTCGATCGTCTCTCGTGAAATGACCAGAAGGTACATGACGGATATGATTACGTACGCCGATACTGACGTCGTTGTAGTCGGTGCTGGCTCCGCCGGCCTCTCGTGCGCCTATGAGCTTAGCAAAAACCCTAACGTTCAGGTAGCCATCATCGAGCAGTCTGTGAGCCCCGGTGGCGGAGCATGGCTGGGAGGCCAACTGTTCTCCGCCATGGTAGTCCGCAAACCAGCGCACCACTTCCTCGACGAGCTCGAGATCGAGTACGACGAGCAAGAAGACTACGTGGTGATCAAACACGCTGCTCTATTCACATCCACCATCATGAGCAAGCTTCTGGCGAGACCAAACGTGAAGCTCTTCAACGCGGTTGCAGCAGAGGACTTGATCATCAAAGGAGGAAGAGTAGGTGGTGTTGTGACCAATTGGGCTTTGGTGTCAATGAACCACGACACACAGTCGTGCATGGACCCGAATGTGATGGAGGCTAAGGTGGTTGTGAGCTCGTGTGGTCATGATGGTCCGATGGGTGCCACAGGGGTGAAGCGATTGAGGAGCGTTGGGATGATCGAGAGTGTGCCGGGGATGAAAGCACTTGATATGAACACTGCTGAAGATGAAATTGTGAAGATGACGAGAGAGGTGGTTCCTGGTATGATTGTCACCGGAATGGAAGTTGCAGAGATCGATGGATCTCCGAGAATGGGACCAACATTTGGGGCTATGATGATATCTGGACAGAAGGCTGCTCATTTGGCATTGAAGGCGTTGGGGTTACCAAATGCTTTGGACGGAACGAGCGTCGGAAGCATGCAGCCGGAGATGATCCTTGCAGCCGCTGATTCCGGTGAGACGGTGGATGCTTAA 1059 53.26 MATAFASSPSTKAKTSFVDHSSFHGVPVTSPVRIQPVKSNPNRNMPITMSAAPYDLGSFTFQPIKESIVSREMTRRYMTDMITYADTDVVVVGAGSAGLSCAYELSKNPNVQVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHHFLDELEIEYDEQEDYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIIKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPMGATGVKRLRSVGMIESVPGMKALDMNTAEDEIVKMTREVVPGMIVTGMEVAEIDGSPRMGPTFGAMMISGQKAAHLALKALGLPNALDGTSVGSMQPEMILAAADSGETVDA 352
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Fso2g00401 352 SUPERFAMILY FAD-NAD(P)-binding domain 49 314 IPR036188 -
Fso2g00401 352 NCBIfam sulfide-dependent adenosine diphosphate thiazole synthase 66 321 IPR002922 -
Fso2g00401 352 Gene3D - 86 321 IPR036188 -
Fso2g00401 352 Gene3D - 55 85 - -
Fso2g00401 352 FunFam Thiamine thiazole synthase, chloroplastic 86 321 - -
Fso2g00401 352 Hamap Thiamine thiazole synthase, chloroplastic [THI4]. 2 330 IPR027495 GO:0009228(InterPro)
Fso2g00401 352 PANTHER THIAMINE THIAZOLE SYNTHASE 12 351 - -
Fso2g00401 352 Pfam Thi4 family 70 303 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Fso2g00401 K03146 cysteine-dependent adenosine diphosphate thiazole synthase [EC:2.4.2.60]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
2775255 Fso Fso2g00401 Fso-Chr2:5576088 Fso6g01747 Fso-Chr6:40582121