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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chma7g07705 ATGGAGGATATGTTAGTTGCAATTGTATCGATGCTTTTAATTGCGGCGTTAGTTCCGCTTTATTTCTGGAGACGCCGTCAAGTTACTAATGAATCTCTTCATCAACATGAAGAAGAACCTCAGGTTCAGCAGAGAGAAGCTGTTGTAAGGCCTGCCGGTGCTGCTCGTAGTAGGATGCGTAGACGGAATACTTCAGCTGCCAGCACGTCATCTGCTCCACAACCTGTAGAAGAAACTGAAGATGGAAGCGATGAGGAAGCTGTTGAAGGCGAATATTATAATGCAAAGAATTCAAAGAAGAAAGGCAGAAAGAAAGAGGAGCGCCAGGCAGCACGTCAGGCTGAAGAGGCGGCAAGGGAGTCAAGAAATACAAAACAAGACCGCTATGCAGAAATACGCAGGCGAAAGGATGAGGAACACGAAGCAAAAGAGCGTATGCTGGAGGAAGAAGCTGCGGCTCGAAAGGCCAAGGAGGAGGAAGCTGCAGCATTAGAGTTTGATAAGTGGAAAGGAGAATTTTCGGTAGATGCTGAAGGTACTACAGAAAATGAAGTTCAAGATGGAACCCAGGGTTTGCTTTATGATTTTGTGGAATACATCAAGAAACAGAAATGCGTCCCCTTGGAAGATCTTGCTGCAGAATTCAAACTACGGACTCAGGATTGTATCAATCGAATCACTTCGTTGGAAGACATGGGGAGATTATCTGGTGTGATGGATGACAGAGGAAAATACATATACATCTCACATGAAGAAATGCAGGCAGTTGCAGACTATATCAAGCGTGAAGGGAGGGTCAGTATTGCCCATCTAGCAAGCCAGTCGAACCAGTTTATAGATTTGGAACACAAAGCACAGTTTGTTGAGGATTTAAGCACTCAAGATGAAATTACAGTTGCTTGA 903 44.52 MEDMLVAIVSMLLIAALVPLYFWRRRQVTNESLHQHEEEPQVQQREAVVRPAGAARSRMRRRNTSAASTSSAPQPVEETEDGSDEEAVEGEYYNAKNSKKKGRKKEERQAARQAEEAARESRNTKQDRYAEIRRRKDEEHEAKERMLEEEAAARKAKEEEAAALEFDKWKGEFSVDAEGTTENEVQDGTQGLLYDFVEYIKKQKCVPLEDLAAEFKLRTQDCINRITSLEDMGRLSGVMDDRGKYIYISHEEMQAVADYIKREGRVSIAHLASQSNQFIDLEHKAQFVEDLSTQDEITVA 300
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chma7g07705 300 Pfam DDRGK domain 95 280 IPR019153 -
Chma7g07705 300 MobiDBLite consensus disorder prediction 61 77 - -
Chma7g07705 300 Gene3D - 191 248 IPR036388 -
Chma7g07705 300 Coils Coil 97 124 - -
Chma7g07705 300 SUPERFAMILY Winged helix DNA-binding domain 187 256 IPR036390 -
Chma7g07705 300 MobiDBLite consensus disorder prediction 107 158 - -
Chma7g07705 300 PANTHER DDRGK DOMAIN-CONTAINING PROTEIN 1 50 295 IPR050899 -
Chma7g07705 300 SMART DDRGK-2 95 280 IPR019153 -
Chma7g07705 300 MobiDBLite consensus disorder prediction 33 158 - -
Chma7g07705 300 FunFam DDRGK domain-containing protein 1 191 248 - -
Chma7g07705 300 Coils Coil 129 167 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chma7g07705 K23344 DDRGK domain-containing protein 1
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
1217349 Chma Chma7g07705 Chma-Chr7:263700849 Chma8g01250 Chma-Chr8:68203856