AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ecan3g02377 ATGTCAACAAAATCATTGAAATCCAGGAAACCCCCATCAAATTTATCCCCGCAATCTTCAACAAAGCCATCATCTTTACCATCACATATTGCCATGATTGAGTTAAAACACAGAATCTTGACTTCACTTTCCAAGCTTTCAGACAGAGACACACACCAAATCGCCATTGAAGATCTTGAAAAAATCATCCAAACACTAACCCCAGATGGAATCACATTGACCCTTAACTCCCTTTATGACGGCGCCGCCTCAGATTCCAACAAACCCGCCGTCAAGAAAGAGTCTTTAAGGCTTTTATGTTACTTATGTGCTGCCCATACTGAATCTGCGTCGACCCATTTGACTAAAATTATTGCCCATGTTGTTAAAAGGCTTAAAGATTCTGATTCAGGTGTTAGAGACACGTGTGGTGATGCAATTGGTCAGCTTTCTCGTTTGTATTTGAAAGGTGAAAATGGGCTTGTTGCTGTTACTTTGTTTGTTAGGCCTTTGTTTGAAGGTTTGAATGATCAGAATAAAGTGGTGCAAGCTGGCTCTGCAATGTGTTTAGCTAAGATGGTTGAAATGGCTTCTGACCCGCCTGTTTCGGCTTTTCAAAAACTTTGTGGGAGAATTTGCAAGTATCTTAATAACCCGAATTTCTTGGCTAAAGCTGCACTTTTGCACGTGGTTTCTAGTCTTTCTCAGGTTGGTGCTATTTCTCCACAATTTTTGGAGCCACTGCTTCAAAGCATACATGACTGTCTTAGCAATTCTGATTGGGCAACTCGAAAGGCAGCTGCTGATGCATTGATTGCCTTGGTTCTGCATTCTAGCAACTTGATAACAGGAAAAACAGGCCCAACTATAACTGCTCTTGAGGCTTGCCGCTTTGATAAGATAAAACCGGCAAGAGAAAGTATAGTTGAAGCTTTGCAACAATGGCAAGGTCTTGCAGGAGGTTCTGGCGATCAAAAAGCACCTGTTCAAGATTCAGTACCAGCCACGTTAGATGAACAAAAAACAGAGGCCCCGCCAAAGAATAATGAACCTGAGGGTAGTAACATACCTGAGAAGGCTGTTGGAATCTTGAAAAAGAAAGCACCTGCTTTGTGTGATAAAGAACTAAACCCCGAGTTCTTTCAAAGACTTGAAAGACGGGTTTCTGGTGAAGTTGAAGTGGTTGTCCCTCGTAGATTTGTGAAGTCCTCTAATGAGCAAAATGGAGAAGAATCTGGCCACAATGATGCAGATGCCGGGTCACAGTCAAAAGAGAGCTACCAAAGATTAGACCGAGGAATCAGTGGTCCTTCTAGAAGGCGAGAATTTGAAGATATGAATGACCTGAGTCAAAGGGAGGGATCCAGGAGCAATAAAGGAAATTTGTTGGCTATCCAGCGGCACTTACTGCAACTTGAGAAACAACAGGCTCATCTCATGAATATGTTGCAGGATTTCATGGGTGGATCTCACGATGGCATGTTGACTTTGGAAAACAGAGTGCGGGGTCTGGAGCGAGTAGTTGAAGACATGGCACGTGATCTATCATTAGCGGGTAATAGTCGAAGGGGTGGAAATTATATGATGGGATTTGAGGAATCTAGTGGTAGACCATTAGGAAAGTACAACGGATTTTCTGACTATCCTAATTCAAAATTAGGGAGGACTGATGACCCGATGTCTTACATGGGTTCAAGTATGAGGGGTAGAGGATCTTCTTGGAGAGCAGATGGTCCCGAAAGCTGGGACTACCATTCATATGGCAGAAACCCGCAAATGGGTTTAAGGAGGGCTATGGATGGCAGGTCACCTAAATCAGAAAACGAAACTGAACCTGTGAATAGAAGGGGTTGGGGGGATAAAGGATCTGGCCCAGCTAGGTTCGGGGAGGGCCCCTCGGCTAGGAGTGTTTGGCAAGCTTCAAAAGATGAAGCCACATTGGAAGCGATTAGGGTGGCAGGTGAAGACAATGTGCCTGTACGGACTGCGCGAGTAGCGGTTCCTGAAATGACTGCAGAAGCAATGGGAGATGAGAATGTGCAGGATCGGGACCCAGTTTGGACATCTTGGACTAATGCCATGGATGCACTTCAGATGGGTGACGCTGATACAGCTTTTGCTGAAGTCTTGTCTACTGAGGATGATTTATTGCTTGTGAAGCTAATGGACAGAACAGGCCCGGTAATTGACCAGCTTTCAAGTGAGGTAGGGACTGAAGTTCTGCATGCTGTTGCCCAGTTTCTTCCAGACCAGAATGTGTTTGATATCTGCTTGTCGTGGCTTCAACAGTTGCTTGATATGATTGTAGAGAATGGAACAGATAATGTGGGAATTCCAATAGAAGTGAAAAAGGAGATTTTAGTGAATCTGAATGAGGCCGCTTCAACTATTGAGCCTCCTGAGGACTGGGAAGGCATGGTGCCAGACCAGCTCTTGTTGCAGCTGGCATCAGCCTGGGATATTGATCTGCATCAGCTAGAAAAGTGA 2466 44.53 MSTKSLKSRKPPSNLSPQSSTKPSSLPSHIAMIELKHRILTSLSKLSDRDTHQIAIEDLEKIIQTLTPDGITLTLNSLYDGAASDSNKPAVKKESLRLLCYLCAAHTESASTHLTKIIAHVVKRLKDSDSGVRDTCGDAIGQLSRLYLKGENGLVAVTLFVRPLFEGLNDQNKVVQAGSAMCLAKMVEMASDPPVSAFQKLCGRICKYLNNPNFLAKAALLHVVSSLSQVGAISPQFLEPLLQSIHDCLSNSDWATRKAAADALIALVLHSSNLITGKTGPTITALEACRFDKIKPARESIVEALQQWQGLAGGSGDQKAPVQDSVPATLDEQKTEAPPKNNEPEGSNIPEKAVGILKKKAPALCDKELNPEFFQRLERRVSGEVEVVVPRRFVKSSNEQNGEESGHNDADAGSQSKESYQRLDRGISGPSRRREFEDMNDLSQREGSRSNKGNLLAIQRHLLQLEKQQAHLMNMLQDFMGGSHDGMLTLENRVRGLERVVEDMARDLSLAGNSRRGGNYMMGFEESSGRPLGKYNGFSDYPNSKLGRTDDPMSYMGSSMRGRGSSWRADGPESWDYHSYGRNPQMGLRRAMDGRSPKSENETEPVNRRGWGDKGSGPARFGEGPSARSVWQASKDEATLEAIRVAGEDNVPVRTARVAVPEMTAEAMGDENVQDRDPVWTSWTNAMDALQMGDADTAFAEVLSTEDDLLLVKLMDRTGPVIDQLSSEVGTEVLHAVAQFLPDQNVFDICLSWLQQLLDMIVENGTDNVGIPIEVKKEILVNLNEAASTIEPPEDWEGMVPDQLLLQLASAWDIDLHQLEK 821
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ecan3g02377 821 MobiDBLite consensus disorder prediction 1 26 - -
Ecan3g02377 821 SMART TOG-3 58 300 IPR034085 -
Ecan3g02377 821 MobiDBLite consensus disorder prediction 396 422 - -
Ecan3g02377 821 MobiDBLite consensus disorder prediction 330 350 - -
Ecan3g02377 821 MobiDBLite consensus disorder prediction 427 445 - -
Ecan3g02377 821 MobiDBLite consensus disorder prediction 396 452 - -
Ecan3g02377 821 SUPERFAMILY ARM repeat 36 790 IPR016024 -
Ecan3g02377 821 Gene3D - 155 295 IPR011989 -
Ecan3g02377 821 Coils Coil 487 507 - -
Ecan3g02377 821 PANTHER MICROTUBULE-ASSOCIATED PROTEIN TORTIFOLIA1 23 814 IPR033337 GO:0005874(InterPro)|GO:0007275(PANTHER)|GO:0008017(PANTHER)|GO:0008017(InterPro)|GO:0009826(PANTHER)|GO:0010005(PANTHER)|GO:0010031(PANTHER)
Ecan3g02377 821 MobiDBLite consensus disorder prediction 593 609 - -
Ecan3g02377 821 Gene3D - 34 154 IPR011989 -
Ecan3g02377 821 MobiDBLite consensus disorder prediction 577 628 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ecan3g02377 K28093 microtubule-associated protein TORTIFOLIA1 and related proteins
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Event-related genes

Select Gene_1 Gene_2 Event_name
84934 Ecan3g02377 Ecan8g02452
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
2107932 Ecan Ecan3g02377 Ecan-Chr3:34272924 Ecan8g02451 Ecan-Chr8:35962492
2126838 Ecan Ecan3g02376 Ecan-Chr3:34272924 Ecan3g02377 Ecan-Chr3:34272924