AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Soca5g02228 ATGTCTTACCACCACGCTACCACCGCCACTGGAAAACCACCAATCTTATCGCATTCTTCCCCAATATTATCTAGGAAAGTTCCAACGAATAAAAGATTCAAGTGTTCTATTGACTTACCAAAACCAATATCAGCAAAGGATGCAGCTAAACTTGTTGTATCCGGGCTTGCTGCGTCCATGGTACTTCTGTCCCCAACAAACCAGGTCATGGCGACCGAACTTCCACATAATAACTTATGCCAGATTGCCAGTACCACCAACAATATGCCAACCCTTCCTATTGATGAGGAGGGTTCAAATATGATGATGATGAGAGGTATGACAGCAAGAAACTTTGATCCTGTAAGATATTCCGGAAGATGGTTTGAAGTTGCTTCGCGTAAACGTGGATTTGCTGGTCAAGGTCAAGAAGATTGTCATTGCACCCAGGGAGTATATACAGTCGATACAGCCGCACCAGCCATTCAGGTAGATACCTTTTGTGTACATGGAGGGCCTGATGGTTATATCACTGGTATACGGGGTAGGGTTCAGTGCCTTTCAGAGGAAGATAAGGATAAAACCGAATCAGACCTAGAAAGAGAAGAGATGATTAAAGAAAAGTGTTATCTTCGGTTTCCCACGTTGCCATTTATTCCCAAATTACCTTATGATGTGATTGATACCGATTATGACAATTTCGCCCTTGTTTCGGGAGCAAAAGACAAGGGCTTTATTCAGATATACTCAAGGACACCAAATCCAGGGACAGAGTTTATTGAGAAGTACAAACTTGTGTTGGCAGACTATGGTTATGATCCAAGCCAAATCAAGGACACCCCACAAGACTGCGAGGTATCTGATAGCCGATTAGCTGCAATGATGTCGATGAGCGGAATGCAACAAGCTTTAACAAATCAATTTCCAGATCTTGAACTCAAATCTGCTGTTAAGTTTGATCCCTTCACAAGTGTATTCGACACCTTGAAGAAACTTGTGCAGCTATATTTCAAGTAG 996 42.47 MSYHHATTATGKPPILSHSSPILSRKVPTNKRFKCSIDLPKPISAKDAAKLVVSGLAASMVLLSPTNQVMATELPHNNLCQIASTTNNMPTLPIDEEGSNMMMMRGMTARNFDPVRYSGRWFEVASRKRGFAGQGQEDCHCTQGVYTVDTAAPAIQVDTFCVHGGPDGYITGIRGRVQCLSEEDKDKTESDLEREEMIKEKCYLRFPTLPFIPKLPYDVIDTDYDNFALVSGAKDKGFIQIYSRTPNPGTEFIEKYKLVLADYGYDPSQIKDTPQDCEVSDSRLAAMMSMSGMQQALTNQFPDLELKSAVKFDPFTSVFDTLKKLVQLYFK 331
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Soca5g02228 331 Gene3D - 107 287 IPR012674 -
Soca5g02228 331 ProSitePatterns Lipocalin signature. 111 124 IPR022272 -
Soca5g02228 331 SUPERFAMILY Lipocalins 108 279 IPR012674 -
Soca5g02228 331 PANTHER LIPOCALIN 109 275 IPR002345 GO:0036094(InterPro)
Soca5g02228 331 MobiDBLite consensus disorder prediction 1 22 - -
Soca5g02228 331 Pfam Lipocalin-like domain 115 275 IPR000566 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Soca5g02228 - -