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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cind3g02149 ATGGCATCAATGACAACAGCTTTCACCTCACCACTCTACACCAAAACCCAATCATCCTTCCATGGAGTCCCAGTCACATCTCCTGTTAGAATGATCCAACCAGTCAGATCATCCAACAAAACAACCACACCCATTACCATGTCATATGATCTTGGATCATTCACGTTCCAACCCATTAAGGAAGCCATCGTGTCACGTGAGATGACTAGGAGGTACATGACTGACATGATTACTTATGCTGATACGGATGTTGTTGTTGTTGGTGCTGGATCTGCTGGTTTGTCTTGTGCTTATGAGCTTAGCAAAAACCCTAACGTTCAGGTAGCTATCATTGAGCAATCCGTGAGCCCAGGTGGTGGTGCATGGCTAGGTGGACAACTATTCTCAGCAATGGTTGTCCGCAAGCCCGCCCACCACTTCCTTGACGAGCTCGAGATCGAGTACGACGAGCAAGAAGATTACGTCGTCATCAAGCATGCCGCTTTGTTCACATCCACAATCATGAGCAAGCTTTTGGCTAGGCCAAATGTCAAGCTCTTTAACGCGGTTGCAGCTGAGGACTTGATCATCAAGGGAGGAAGAGTAGGTGGTGTTGTGACCAACTGGTCTTTGGTCGCACAGAACCACGACACACAATCATGCATGGACCCTAATGTTATGGAGGCCAAGGTTGTTGTCAGCTCGTGTGGCCATGATGGGCCCATGGGCGCTACTGGTGTTAAGAGGCTTAGGAGTGTTGGCATGATCGAGAGCGTTCCTGGGATGAAGGCTCTCGACATGAACACTGCTGAAGATGCGATTGTGAAGCTGACTAGAGAGATTGTTCCTGGTATGATTGTTACCGGGATGGAAGTTGCTGAGATCGATGGATCTCCCAGAATGGGGCCAACTTTTGGTGCTATGATGATATCAGGACAGAAGGCTGCTCATTTGGCCTTGAAGGCGTTGGGTCTTCCCAACGCGTTGGATGGAACATTGGTGGGAAGCCTCCACCCTGAGCTTATCCTGGCTGCTGCCGACTCTAGCGAGACTGTTGATGCCTAA 1044 49.43 MASMTTAFTSPLYTKTQSSFHGVPVTSPVRMIQPVRSSNKTTTPITMSYDLGSFTFQPIKEAIVSREMTRRYMTDMITYADTDVVVVGAGSAGLSCAYELSKNPNVQVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHHFLDELEIEYDEQEDYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIIKGGRVGGVVTNWSLVAQNHDTQSCMDPNVMEAKVVVSSCGHDGPMGATGVKRLRSVGMIESVPGMKALDMNTAEDAIVKLTREIVPGMIVTGMEVAEIDGSPRMGPTFGAMMISGQKAAHLALKALGLPNALDGTLVGSLHPELILAAADSSETVDA 347
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cind3g02149 347 PANTHER THIAMINE THIAZOLE SYNTHASE 11 346 - -
Cind3g02149 347 NCBIfam sulfide-dependent adenosine diphosphate thiazole synthase 61 316 IPR002922 -
Cind3g02149 347 SUPERFAMILY FAD-NAD(P)-binding domain 45 309 IPR036188 -
Cind3g02149 347 FunFam Thiamine thiazole synthase, chloroplastic 81 316 - -
Cind3g02149 347 Hamap Thiamine thiazole synthase, chloroplastic [THI4]. 2 325 IPR027495 GO:0009228(InterPro)
Cind3g02149 347 Gene3D - 50 80 - -
Cind3g02149 347 Gene3D - 81 316 IPR036188 -
Cind3g02149 347 Pfam Thi4 family 65 298 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cind3g02149 K03146 cysteine-dependent adenosine diphosphate thiazole synthase [EC:2.4.2.60]
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Event-related genes

Select Gene_1 Gene_2 Event_name
67802 Cind2g06149 Cind3g02149
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
1779281 Cind Cind2g06149 Cind-Chr2:338089610 Cind3g02149 Cind-Chr3:316715095