AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Fra11g02391 ATGGCGTCAATGGCTACAGCCTTCACATCATCTCTCTCCACCAAGGCCAAAACCTCTTTCGTCGACCACTCATCCTTCCACGGCGTTCCGGTGACATCTCCGGTTCGGATCCAAACGGTCAAATCGAACCCGAACCGGAACATAACAATCACTATGTCCGCTGCTCCGTACGATCTCGGATCCTTCACCTTTCAACCGATCAAAGAGTCGATCGTCGCTCGTGAAATGACCAGAAGGTACATGACGGATATGATCACGTACGCCGATACCGACGTCGTTGTAGTCGGTGCTGGCTCCGCTGGCCTCTCGTGTGCCTATGAGCTTAGCAAAAACCCTAACGTTCAGGTAGCCATCATCGAGCAGTCTGTGAGCCCCGGTGGTGGAGCATGGCTCGGGGGCCAACTGTTCTCCGCCATGGTAGTCCGCAAACCAGCGCACCACTTCCTCGACGAGCTCGAGATCGAATACGACGAGCAAGAAGACTACGTGGTGATCAAACACGCTGCTCTATTCACATCCACCATCATGAGCAAGGTTCTAGCGAGACCAAACGTGAAGCTCTTCAACGCGGTTGCAGCGGAGGACTTGATCATCAAGGGAGGAAGAGTGGGTGGTGTTGTGACCAATTGGGCTTTGGTGTCAATGAACCACGACACACAGTCGTGTATGGACCCGAATGTGATGGAGGCTAAGGTGGTTGTGAGCTCGTGCGGTCATGATGGTCCGATGGGTGCCACAGGGGTGAAGAGATTGAGGAGCGTTGGGATGATCGAGAGTGTGCCGGGGATGAAGGCTCTTGATATGAACACTGCTGAAGATGAAATTGTGAAGATGACGAGAGAGGTGGTTCCTGGTATGATTGTCACTGGAATGGAAGTTGCAGAGATTGATGGATCTCCGAGAATGGGACCAACATTTGGGGCTATGATGATATCTGGACAAAAGGCTGCTCATTTGGCATTGAAGGCGTTGGGGCTACCAAATGCTTTGGACGGAACGAGTGTCGGAAGCATGCAGCCGGAGATGATCCTTGCGGCCGCTGATTCCGGTGAGACGGTGGATGCTTAA 1068 53.0 MASMATAFTSSLSTKAKTSFVDHSSFHGVPVTSPVRIQTVKSNPNRNITITMSAAPYDLGSFTFQPIKESIVAREMTRRYMTDMITYADTDVVVVGAGSAGLSCAYELSKNPNVQVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHHFLDELEIEYDEQEDYVVIKHAALFTSTIMSKVLARPNVKLFNAVAAEDLIIKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPMGATGVKRLRSVGMIESVPGMKALDMNTAEDEIVKMTREVVPGMIVTGMEVAEIDGSPRMGPTFGAMMISGQKAAHLALKALGLPNALDGTSVGSMQPEMILAAADSGETVDA 355
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Fra11g02391 355 PANTHER THIAMINE THIAZOLE SYNTHASE 13 354 - -
Fra11g02391 355 NCBIfam sulfide-dependent adenosine diphosphate thiazole synthase 69 324 IPR002922 -
Fra11g02391 355 Gene3D - 89 324 IPR036188 -
Fra11g02391 355 Hamap Thiamine thiazole synthase, chloroplastic [THI4]. 6 333 IPR027495 GO:0009228(InterPro)
Fra11g02391 355 FunFam Thiamine thiazole synthase, chloroplastic 89 324 - -
Fra11g02391 355 Pfam Thi4 family 74 306 - -
Fra11g02391 355 SUPERFAMILY FAD-NAD(P)-binding domain 52 317 IPR036188 -
Fra11g02391 355 Gene3D - 58 88 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Fra11g02391 K03146 cysteine-dependent adenosine diphosphate thiazole synthase [EC:2.4.2.60]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
2471526 Fra Fra10g00373 Fra-Chr10:11040642 Fra11g02391 Fra-Chr11:77565555