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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dapi23g00501 ATGGCGTCCATGGCTACAACCTTCGCCTCAGCCTCATCTCTCTCCACCAAAACCAAAACCTCTTTCTTCGATCAATCATCCTTCCATGGCGTTCCGGTCTCTTCTCCGATCCGGATCCAGCAACTCAAATCCAGCAATAACAGAAACATGCCGATCTCCATGTCCGCTGCTCCGTACGATCTCGGATCCTTCACGTTTCAACCGATCAAAGAATCGATCGTTTCTCGTGAAATGACCAGACGTTACATGACCGATATGATTACGTATGCTGATACGGACGTCGTTGTCGTCGGTGCTGGCTCCGCCGGTCTCTCATGCGCATATGAACTTAGCAAAAACCCTAACGTTCAGGTAGCCATCATTGAGCAGTCTGTGAGCCCCGGTGGCGGAGCATGGCTCGGAGGACAACTGTTTTCAGCCATGGTTGTCCGCAAGCCTGCACACCACTTCCTCGACGAGCTTGAGATCGAGTACGACGAGCAAGAAGACTATGTCGTCATCAAGCACGCTGCTCTGTTCACCTCCACCATCATGAGCAAGCTTTTGGCCAGACCAAATGTTAAGCTCTTTAACGCGGTGGCCGCCGAGGACTTAATCATTAAGGGAGGAAGAGTAGGTGGTGTGGTGACTAACTGGGCTTTGGTGTCGATGAACCATGACACACAATCGTGCATGGACCCGAATGTGATGGAGGCTAAGGTGGTTGTGAGTTCATGTGGCCATGATGGTCCCATGGGTGCGACTGGTGTGAAGCGGTTGAGGAGTGTTGGGATGATCGAGAGTGTTCCGGGGATGAAAGCCCTCGACATGAACACTGCTGAGGATGAAATTGTGAAGATGACCAGAGAGGTTGTTCCGGGCATGATTGTTACCGGAATGGAAGTTGCGGAGATCGACGGATCTCCGAGAATGGGACCAACATTTGGGGCTATGATGATATCTGGACAGAAGGCTGCTCATTTGGCATTGAAGGCGTTGGGGCTACCAAATGCATTGGACGGAACAAGCGTCGGAACCATGCAACCGGAGCTGATCCTGGCTGCTGCTGATTCCGGTGAGAGTGTGGATGCCTAG 1074 52.05 MASMATTFASASSLSTKTKTSFFDQSSFHGVPVSSPIRIQQLKSSNNRNMPISMSAAPYDLGSFTFQPIKESIVSREMTRRYMTDMITYADTDVVVVGAGSAGLSCAYELSKNPNVQVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHHFLDELEIEYDEQEDYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIIKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPMGATGVKRLRSVGMIESVPGMKALDMNTAEDEIVKMTREVVPGMIVTGMEVAEIDGSPRMGPTFGAMMISGQKAAHLALKALGLPNALDGTSVGTMQPELILAAADSGESVDA 357
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dapi23g00501 357 FunFam Thiamine thiazole synthase, chloroplastic 91 326 - -
Dapi23g00501 357 NCBIfam sulfide-dependent adenosine diphosphate thiazole synthase 71 326 IPR002922 -
Dapi23g00501 357 Gene3D - 91 326 IPR036188 -
Dapi23g00501 357 Gene3D - 60 90 - -
Dapi23g00501 357 SUPERFAMILY FAD-NAD(P)-binding domain 49 319 IPR036188 -
Dapi23g00501 357 Pfam Thi4 family 75 308 - -
Dapi23g00501 357 Hamap Thiamine thiazole synthase, chloroplastic [THI4]. 9 335 IPR027495 GO:0009228(InterPro)
Dapi23g00501 357 PANTHER THIAMINE THIAZOLE SYNTHASE 14 356 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dapi23g00501 K03146 cysteine-dependent adenosine diphosphate thiazole synthase [EC:2.4.2.60]
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Event-related genes

Select Gene_1 Gene_2 Event_name
251741 Dapi7g00483 Dapi23g00501
256694 Dapi23g00501 Dapi16g01763
381597 Dapi16g01763 Dapi23g00501
387134 Dapi23g00501 Dapi7g00483
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
1961706 Dapi Dapi16g01763 Dapi-Chr16:60771060 Dapi23g00501 Dapi-Chr23:11270775
2035315 Dapi Dapi23g00501 Dapi-Chr23:11270775 Dapi7g00483 Dapi-Chr7:10660843