AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Chmo15g00890 | ATGGTGTCTACTGCTAAGATCAAATCCGTTGATTTCTACAGGAAAATACCAAGAGATTTGACAGAGGCGTCACTGTCAGGTGCCAGCTTGTCTATCGTGGCCGCTCTTTCCATGATGTTTTTATTTGGAATGGAACTACATAATTATCTGAGTATCAGTACATCAACTTCTGTCATAGTTGACAGAAGTTCTGATGAGGATTACTTACGGATTGATTTCAATATTAGTTTTCCAGCCTTATCCTGTGAGTTTGCATCTGTGGACGTGAGTGATGTACTGGGAACTAACAGGTTGAACATAACCAAAACAGTCCGCAAATATTCAATTAATAAGCATCTACAAACTACTGGCTCTGAGTTTGACTCTGGATCAGTTGGTCATGTAGTCAAGCATGGTGATGAGGCTGACGAGGATTATGGTGAAGGATCCTTAACTCTAAATTCACGTAACTTTGATAGGGTTTCTCATCAGCATTCAATTGTGGTTGTAAATTTCTATGCTCCTTGGTGCTATTGGAGTAACCGTCTGAAACCTTCATGGGAGAAGGCAGCCAAAATTATAAGAGAAAGGCATGATCCAGAAATTGATGGTCGTATTATTATGGGAAAGGTGGACTGTACTGAAGAAGTTGATCTGTGTAGAAGTCACCACATACAGGGTTATCCATCTATTCGCATATTCCGCAAGGGCAGTGATGTCAGGGATGAGCATGGGCACCACGAGCATGAGTCATATTATGGTGACCGTGATACAGAAACCTTGGTAGATACTATGGAAAAATTGGTTGCACCTATTGCGGTGGAATCCAATCTGGCCTTGGAGGATAAATCTGGCACAGCTACAGAGACTGCTAAAAGACCTGCACCGCGTGAAGCAGGATGTAGAATCGAAGGGTTTGTTCGAGTCAAGAAGGTTCCTGGTAATCTTGTAATTGCGGCCCGTTCTGCAGCCCACTCCTTTGATGCTTCCCGGATGAACATGTCGCATGTAATTTCTTCATTTTCTTTTGGTAAGAAGATCACTCCGAGGGCGATGAGTGATATTAAGCGAATACTACCTTACATTGGCGTAAGCCATGACAAGTTGAATGGCAAGACATATCTCACTGACCCAGACGATCATGCAAATGTTACAGTAGAGCATTATCTTCAAGTTGTAAAGACTGAGGTAATGAGGTCATCTCATCAACTGATTGAGGATTACGAGTATACAGCACATAGTAGCTTGGTACATGCTTATTCGATCCCTGTTGTGAAGTTCCATTATGAGCCATCCCCAATGCAGGTCTTAGTTACAGAAAATCCCAAATCATTTTCTCATTTCATCACCAACGTCTGTGCTATTATCGGTGGTGTTTTCACGGTTGCTGGGATACTGGATTCGATTCTGCACAATACATTGAGACTAGTGAAAAAAGTTGAACTAGGGAAGAACTTTTAG | 1440 | 42.01 | MVSTAKIKSVDFYRKIPRDLTEASLSGASLSIVAALSMMFLFGMELHNYLSISTSTSVIVDRSSDEDYLRIDFNISFPALSCEFASVDVSDVLGTNRLNITKTVRKYSINKHLQTTGSEFDSGSVGHVVKHGDEADEDYGEGSLTLNSRNFDRVSHQHSIVVVNFYAPWCYWSNRLKPSWEKAAKIIRERHDPEIDGRIIMGKVDCTEEVDLCRSHHIQGYPSIRIFRKGSDVRDEHGHHEHESYYGDRDTETLVDTMEKLVAPIAVESNLALEDKSGTATETAKRPAPREAGCRIEGFVRVKKVPGNLVIAARSAAHSFDASRMNMSHVISSFSFGKKITPRAMSDIKRILPYIGVSHDKLNGKTYLTDPDDHANVTVEHYLQVVKTEVMRSSHQLIEDYEYTAHSSLVHAYSIPVVKFHYEPSPMQVLVTENPKSFSHFITNVCAIIGGVFTVAGILDSILHNTLRLVKKVELGKNF | 479 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Chmo15g00890 | 479 | Pfam | Endoplasmic reticulum vesicle transporter | 288 | 460 | IPR012936 | - | |
| Chmo15g00890 | 479 | Gene3D | Glutaredoxin | 131 | 289 | - | - | |
| Chmo15g00890 | 479 | SUPERFAMILY | Thioredoxin-like | 138 | 261 | IPR036249 | - | |
| Chmo15g00890 | 479 | CDD | PDI-a-family | 144 | 258 | - | - | |
| Chmo15g00890 | 479 | FunFam | Protein disulfide-isomerase 5-4 | 131 | 286 | - | - | |
| Chmo15g00890 | 479 | Pfam | Endoplasmic Reticulum-Golgi Intermediate Compartment (ERGIC) | 7 | 97 | IPR039542 | - | |
| Chmo15g00890 | 479 | ProSiteProfiles | Thioredoxin domain profile. | 114 | 263 | IPR013766 | - | |
| Chmo15g00890 | 479 | PANTHER | ENDOPLASMIC RETICULUM-GOLGI INTERMEDIATE COMPARTMENT PROTEIN | 1 | 473 | IPR045888 | GO:0005783(PANTHER)|GO:0030134(PANTHER) | |
| Chmo15g00890 | 479 | Pfam | Thioredoxin | 145 | 243 | IPR013766 | - |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Chmo15g00890 | - | - |
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| 49252 | Chmo15g00890 | Chmo16g01017 | |
| 49253 | Chmo15g00890 | Chmo17g00928 | |
| 49254 | Chmo15g00890 | Chmo18g01002 | |
| 49255 | Chmo15g00890 | Chmo22g05179 | |
| 49256 | Chmo15g00890 | Chmo24g05201 | |
| 213706 | Chmo14g00950 | Chmo15g00890 | |
| 226312 | Chmo15g00890 | Chmo13g01008 | |
| 239052 | Chmo13g01008 | Chmo15g00890 |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Chmo | Chmo-Chr15:51089160 | Chmo15g01279 | Chmo-Chr15:75061331 | dispersed | |
| Chmo | Chmo-Chr10:249225423 | Chmo15g00890 | Chmo-Chr15:51089160 | transposed | |
| Chmo | Chmo-Chr14:47116935 | Chmo15g00890 | Chmo-Chr15:51089160 | transposed | |
| Chmo | Chmo-Chr24:104203849 | Chmo15g00890 | Chmo-Chr15:51089160 | transposed | |
| Chmo | Chmo-Chr15:206273021 | Chmo15g00890 | Chmo-Chr15:51089160 | transposed | |
| Chmo | Chmo-Chr24:23043526 | Chmo15g00890 | Chmo-Chr15:51089160 | transposed | |
| Chmo | Chmo-Chr5:103566823 | Chmo15g00890 | Chmo-Chr15:51089160 | transposed | |
| Chmo | Chmo-Chr13:52655009 | Chmo15g00890 | Chmo-Chr15:51089160 | wgd | |
| Chmo | Chmo-Chr14:47115900 | Chmo15g00890 | Chmo-Chr15:51089160 | wgd | |
| Chmo | Chmo-Chr15:51089160 | Chmo16g01017 | Chmo-Chr16:43554657 | wgd | |
| Chmo | Chmo-Chr15:51089160 | Chmo17g00928 | Chmo-Chr17:39095010 | wgd | |
| Chmo | Chmo-Chr15:51089160 | Chmo18g01002 | Chmo-Chr18:43130562 | wgd | |
| Chmo | Chmo-Chr15:51089160 | Chmo22g05179 | Chmo-Chr22:305304633 | wgd | |
| Chmo | Chmo-Chr15:51089160 | Chmo23g05140 | Chmo-Chr23:299931127 | wgd | |
| Chmo | Chmo-Chr15:51089160 | Chmo24g05201 | Chmo-Chr24:302082218 | wgd |