AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Soca5g02232 ATGGTTAAATCAATCTACATTGTCGGAATTTTAAGTATTTTGTTGTTGATACAGAACAGTAATGCATATGAGTTCATGGTTGGGGGTTCCGGCGATTGGAGTCTTGCATCAACCTCTTATAATCAATGGGCGGAAAGAAGCCGCTTTCAAATTGGGGACACCATTTTGTTCAAGTATCAAGCCGGGAAGGATTCAGTGGTTCAAGTAAGCAAAGACGATTACAACAACTGCAACGCAGCATCACCCATTGCAAAGTATAGTGATGGTCACTCTGTGGTCAAGTTGAACCAATCCGGGCCTCATCATTTCATTAGTGGACTTGTGGAAAACTGTAAAAACAATGAAAAGGTTGTAGTGGTTGTAATGGCAGATAGAAGCAACCGGTCACCAACAAGCTCACCTCCGTCTCCTGCTCCATCAGGTGAAGAGTCTCCATCTCCTCCACCAGAAGGGGGAGAGCTTCCATCTCCTCCCCCAGCTCCATCTACAGAAGATAATAACCCGACCCCAGCCCCAAATGCCGCATCTTCAATTGTCACTAGTTTCATTTACTCTATTGTTGCTTTTGCTGGCTCGTCGCTTCTCTTTGTACTTTGA 597 44.72 MVKSIYIVGILSILLLIQNSNAYEFMVGGSGDWSLASTSYNQWAERSRFQIGDTILFKYQAGKDSVVQVSKDDYNNCNAASPIAKYSDGHSVVKLNQSGPHHFISGLVENCKNNEKVVVVVMADRSNRSPTSSPPSPAPSGEESPSPPPEGGELPSPPPAPSTEDNNPTPAPNAASSIVTSFIYSIVAFAGSSLLFVL 198
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Soca5g02232 198 CDD OsENODL1-like 23 116 IPR041846 -
Soca5g02232 198 PANTHER BLUE COPPER PROTEIN 18 141 IPR039391 GO:0009055(InterPro)|GO:0046658(PANTHER)
Soca5g02232 198 FunFam Early nodulin-like protein 1 22 126 - -
Soca5g02232 198 SUPERFAMILY Cupredoxins 22 122 IPR008972 -
Soca5g02232 198 Pfam Plastocyanin-like domain 33 113 IPR003245 GO:0009055(InterPro)
Soca5g02232 198 MobiDBLite consensus disorder prediction 124 174 - -
Soca5g02232 198 MobiDBLite consensus disorder prediction 132 166 - -
Soca5g02232 198 Gene3D - 23 133 IPR008972 -
Soca5g02232 198 ProSiteProfiles Phytocyanin domain profile. 23 123 IPR003245 GO:0009055(InterPro)
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Soca5g02232 - -
leaf

Event-related genes

Select Gene_1 Gene_2 Event_name
155600 Soca2g04437 Soca5g02232
156563 Soca4g03185 Soca5g02232
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
5169484 Soca Soca9g00761 Soca-Chr9:8503317 Soca5g02232 Soca-Chr5:23817101
5175887 Soca Soca2g04437 Soca-Chr2:88392361 Soca5g02232 Soca-Chr5:23817101
5178041 Soca Soca4g03185 Soca-Chr4:61900405 Soca5g02232 Soca-Chr5:23817101
leaf

Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Soca7g04892 . 13 141 PhytocyaNIN gene family AT1G79800 43.411 1.61e-38 129.0
Soca4g04161 . 3 195 PhytocyaNIN gene family AT4G28365 40.909 7.07e-43 140.0
Soca2g00702 . 3 74 PhytocyaNIN gene family AT3G20570 33.333 5.38e-07 43.5
Soca2g00692 . 3 106 PhytocyaNIN gene family AT3G20570 34.615 2.12e-15 67.0
Soca2g00686 . 3 115 PhytocyaNIN gene family AT3G20570 31.858 2.01e-15 67.4
Soca2g00680 . 7 88 PhytocyaNIN gene family AT4G28365 33.735 1.51e-11 55.8
Soca2g00678 . 5 92 PhytocyaNIN gene family AT3G20570 34.409 1.48e-12 59.3
Soca5g02369 . 9 130 PhytocyaNIN gene family AT4G27520 58.197 1.43e-47 157.0
Soca5g02232 ACH 5 202 PhytocyaNIN gene family AT3G20570 47.783 1.67e-54 171.0
Soca3g01747 ACH 3 169 PhytocyaNIN gene family AT5G15350 48.503 2.73e-55 171.0
Soca2g02803 . 1 100 PhytocyaNIN gene family AT3G20570 37.0 8.45e-17 72.0
Soca3g04410 . 9 201 PhytocyaNIN gene family AT1G08500 56.0 5.31e-70 212.0
Soca7g01156 ACH 5 168 PhytocyaNIN gene family AT5G15350 53.614 3.50e-59 180.0
Soca7g01155 . 5 146 PhytocyaNIN gene family AT5G15350 54.167 1.07e-52 166.0
Soca7g01157 ACH 32 162 PhytocyaNIN gene family AT2G27035 43.609 1.87e-36 122.0
Soca2g05596 . 33 160 PhytocyaNIN gene family AT1G64640 57.778 3.08e-46 149.0
Socaptg000381l_1g00244 . 10 262 PhytocyaNIN gene family AT4G27520 42.91 7.52e-50 167.0
Soca4g03185 ACH 1 133 PhytocyaNIN gene family AT3G20570 50.0 1.36e-44 144.0
Soca9g00761 . 18 155 PhytocyaNIN gene family AT5G57920 47.826 9.25e-42 137.0
Soca5g02625 . 12 130 PhytocyaNIN gene family AT4G27520 47.059 2.80e-32 117.0
Soca7g04040 . 9 126 PhytocyaNIN gene family AT3G18590 45.082 9.15e-28 101.0
Soca9g02772 . 12 153 PhytocyaNIN gene family AT1G08500 43.75 2.18e-35 122.0
Soca3g04298 . 58 201 PhytocyaNIN gene family AT1G08500 58.904 6.37e-50 160.0
Soca2g04437 ACH 3 188 PhytocyaNIN gene family AT3G20570 45.876 3.47e-50 160.0
Soca6g02115 . 5 133 PhytocyaNIN gene family AT4G31840 33.077 1.82e-22 85.5
Soca3g01805 ACH 4 172 PhytocyaNIN gene family AT5G15350 45.562 1.02e-51 161.0