AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Fro12g02213 ATGGCGTCAATGGCTACAGCCTTCACATCATCTCTCTCCACCAAGGCCAAAGCCTCTTTCGTCGATCACTCATCCTTCCATGGCGTTCCGGTGACATCTTCGGTCCGGATCCAACCGGTCAAATCGAACCCGAACCGGAACATGCCGATCACTATGTCCGCTGCTCCGTACGATCTCGGATCCTTCACCTTTCAACCGATCAAAGAGTCGATTGTGGCTCGTGAAATGACCAGAAGGTACATGACCGATATGATCACCTACGCCGATACCGACGTCGTTGTAGTCGGTGCTGGCTCCGCTGGTCTCTCCTGCGCCTATGAGCTTAGCAAAAACCCTAACGTTCAGGTAGCCATCATCGAGCAGTCTGTGAGCCCTGGTGGCGGAGCATGGCTGGGGGGCCAACTGTTCTCCGCCATGGTAGTCCGCAAACCAGCGCACCACTTCCTCGACGAGCTCGAGATCGAGTACGACGAGCAAGAAGACTACGTGGTGATCAAACACGCTGCTCTGTTCACATCCACCATCATGAGCAAGCTTCTGGCGAGGCCAAACGTGAAGCTCTTCAACGCGGTTGCAGCAGAGGACTTGATCATCAAGGGAGGCAGAGTAGGTGGTGTTGTGACCAATTGGGCTTTGGTGTCAATGAACCACGACACACAGTCTTGTATGGACCCGAATGTGATGGAGGCTAAGGTGGTTGTGAGCTCGTGTGGTCATGATGGTCCGATGGGTGCCACAGGGGTGAAGCGATTGAGGAGCGTTGGGATGATCGAGAGTGTTCCTGGGATGAAGGCTCTTGACATGAACACTGCTGAAGATGAAATTGTGAAGATGACCAGAGAGGTGGTTCCTGGTATGATTGTCACCGGAATGGAAGTTGCAGAGATTGACGGATCTCCGAGAATGGGACCAACATTTGGGGCTATGATGATATCCGGACAGAAGGCTGCTCATTTGGCATTGAAGGCGTTGGGGCTACCAAATGCTTTGGACGGAACGAGCGTCGGAAGCATGCAGCCGGAGCTGATCCTTGCGGCCGCTGATTCCGGTGAGACGGTGGATGCTTAA 1068 53.84 MASMATAFTSSLSTKAKASFVDHSSFHGVPVTSSVRIQPVKSNPNRNMPITMSAAPYDLGSFTFQPIKESIVAREMTRRYMTDMITYADTDVVVVGAGSAGLSCAYELSKNPNVQVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHHFLDELEIEYDEQEDYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIIKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPMGATGVKRLRSVGMIESVPGMKALDMNTAEDEIVKMTREVVPGMIVTGMEVAEIDGSPRMGPTFGAMMISGQKAAHLALKALGLPNALDGTSVGSMQPELILAAADSGETVDA 355
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Fro12g02213 355 Pfam Thi4 family 74 306 - -
Fro12g02213 355 PANTHER THIAMINE THIAZOLE SYNTHASE 13 354 - -
Fro12g02213 355 SUPERFAMILY FAD-NAD(P)-binding domain 52 317 IPR036188 -
Fro12g02213 355 Hamap Thiamine thiazole synthase, chloroplastic [THI4]. 6 333 IPR027495 GO:0009228(InterPro)
Fro12g02213 355 NCBIfam sulfide-dependent adenosine diphosphate thiazole synthase 69 324 IPR002922 -
Fro12g02213 355 FunFam Thiamine thiazole synthase, chloroplastic 89 324 - -
Fro12g02213 355 Gene3D - 89 324 IPR036188 -
Fro12g02213 355 Gene3D - 58 88 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Fro12g02213 K03146 cysteine-dependent adenosine diphosphate thiazole synthase [EC:2.4.2.60]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
2560727 Fro Fro12g02213 Fro-Chr12:29466290 Fro2g01357 Fro-Chr2:16878620