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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ecan3g02362 ATGGCATCCATAGCAACAACCTTTGTATCCAAGACATCTTTCATCGACCAATCATCATTCCATGGCGCCCCAGTACTTTCATCTCATCCCAAACGGATCACTTCCGTCAAATCAAACAAGAAGCAGATCACCATGTCTGCCGCCACACCTAATTATGATCTAGGATCATTCACGTTTGCACCCATCAAAGAAGCCATCGTGTCGCGTGAAATGACCAGAAGATACATGACCGATATGATCACGTATGCTGACACCGATGTTGTTGTTGTTGGGGCTGGCTCTGCTGGTCTTTCTTGTGCTTATGAGCTTAGCAAAAACCCCAACGTTCAGGTAGCCATCATTGAGCAATCTGTGAGCCCTGGTGGTGGAGCATGGCTGGGTGGACAATTGTTCTCAGCCATGGTTGTCCGCAAGCCAGCACACCACTTCCTAGACGAGCTCGAGATCGAGTACGACGAGCAAGAGGACTACGTGGTAATCAAGCACGCCGCTCTGTTCACCTCCACCATCATGAGCAAGCTTTTGGCCAAGCCAAATGTGAAGCTCTTCAACGCGGTCGCTGCTGAAGACTTGATAATCAAGGGAGGAAGAGTAGGTGGTGTTGTGACCAACTGGGCTTTGGTGGCAATGAACCACGACACACAATCGTGTATGGACCCAAATGTGATGGAGTCTAAGGTGGTTGTGAGCTCTTGTGGCCATGATGGTCCCATGGGTGCCACTGGAGTCAAACGACTTCGGAGCGTTGGGATGATTGAGAGTGTTCCTGGTATGAAAGCTCTTGACATGAACACTGCTGAAGATGAAATTGTCAAGATGACTCGAGAGGTTGTTCCTGGTATGATTGTTACCGGAATGGAAGTTGCTGAGATTGATGGATCTCCAAGAATGGGGCCAACGTTTGGGGCAATGATGATCTCAGGGCAGAAGGCTGCTCATCTGGCTTTGAAGTCGTTGGGACTTCCTAATGCATTGGATGGGACCCTTGTGGGCAGCATGCACCCAGAGCTGATCCTTGCTGCTGCCGACTCTTCCGAGACCGTTGATGCCTGA 1053 49.95 MASIATTFVSKTSFIDQSSFHGAPVLSSHPKRITSVKSNKKQITMSAATPNYDLGSFTFAPIKEAIVSREMTRRYMTDMITYADTDVVVVGAGSAGLSCAYELSKNPNVQVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHHFLDELEIEYDEQEDYVVIKHAALFTSTIMSKLLAKPNVKLFNAVAAEDLIIKGGRVGGVVTNWALVAMNHDTQSCMDPNVMESKVVVSSCGHDGPMGATGVKRLRSVGMIESVPGMKALDMNTAEDEIVKMTREVVPGMIVTGMEVAEIDGSPRMGPTFGAMMISGQKAAHLALKSLGLPNALDGTLVGSMHPELILAAADSSETVDA 350
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ecan3g02362 350 NCBIfam sulfide-dependent adenosine diphosphate thiazole synthase 64 319 IPR002922 -
Ecan3g02362 350 FunFam Thiamine thiazole synthase, chloroplastic 84 319 - -
Ecan3g02362 350 Hamap Thiamine thiazole synthase, chloroplastic [THI4]. 2 328 IPR027495 GO:0009228(InterPro)
Ecan3g02362 350 Gene3D - 84 319 IPR036188 -
Ecan3g02362 350 SUPERFAMILY FAD-NAD(P)-binding domain 43 313 IPR036188 -
Ecan3g02362 350 Pfam Thi4 family 68 301 - -
Ecan3g02362 350 Gene3D - 53 83 - -
Ecan3g02362 350 PANTHER THIAMINE THIAZOLE SYNTHASE 12 349 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ecan3g02362 K03146 cysteine-dependent adenosine diphosphate thiazole synthase [EC:2.4.2.60]
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Event-related genes

Select Gene_1 Gene_2 Event_name
84929 Ecan3g02362 Ecan8g02445
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
2143721 Ecan Ecan3g02362 Ecan-Chr3:34197547 Ecan8g02445 Ecan-Chr8:35899126