AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chmo14g00940 ATGGCATCAATGACAACAGCTTTCACCTCACCACTCTACACCAAAACCCAATCATCCTTCCATGGAGTCCCAGTCACATCACCTGTTAGAATGATCCAACCAGTCAGATCATCCAACAAAACAAACACACCCATTACCATGTCGTATGATCTTGGATCATTCACGTTCCAACCCATTAAGGAAGCTATTGTGTCACGTGAGATGACTAGGAGGTACATGACTGACATGATTACTTATGCTGATACTGATGTTGTTGTTGTTGGTGCTGGATCTGCTGGTTTGTCTTGTGCTTATGAGCTTAGCAAAAACCCTAACGTTCAGGTAGCTATCATTGAGCAATCCGTGAGCCCAGGTGGTGGTGCATGGCTAGGTGGACAACTATTCTCAGCAATGGTTGTCCGCAAGCCTGCCCACCACTTCCTTGACGAGCTCGAGATCGAGTACGACGAGCAAGAAGACTACGTTGTCATCAAACACGCCGCTTTGTTCACATCCACAATCATGAGCAAGCTTTTGGCTAGGCCAAATGTCAAGCTCTTTAACGCGGTTGCAGCTGAGGACTTGATCATCAAGGGAGGAAGAGTAGGTGGTGTTGTGACCAACTGGTCTTTGGTCGCACAGAACCACGACACACAATCATGCATGGACCCTAATGTTATGGAGGCTAAGGTGGTTGTCAGCTCATGTGGCCATGATGGGCCCATGGGCGCTACTGGTGTTAAGAGGCTTAGGAGTGTTGGCATGATCGAGAGCGTTCCTGGGATGAAGGCTCTCGACATGAACACTGCTGAAGATGCAATTGTGAAGCTGACTAGAGAGATTGTTCCTGGTATGATTGTTACCGGGATGGAAGTTGCTGAGATCGATGGATCTCCCAGGATGGGGCCAACTTTTGGTGCTATGATGATCTCAGGACAGAAGGCTGCTCATTTGGCCTTGAAGGCGTTGGGTCTTCCTAACGCGTTGGATGGAACATTGGTGGGAAGCCTCCACCCAGAGCTTATCCTGGCTGCTGCCGACTCTAGCGAGACTGTTGATGCCTAA 1044 48.95 MASMTTAFTSPLYTKTQSSFHGVPVTSPVRMIQPVRSSNKTNTPITMSYDLGSFTFQPIKEAIVSREMTRRYMTDMITYADTDVVVVGAGSAGLSCAYELSKNPNVQVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHHFLDELEIEYDEQEDYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIIKGGRVGGVVTNWSLVAQNHDTQSCMDPNVMEAKVVVSSCGHDGPMGATGVKRLRSVGMIESVPGMKALDMNTAEDAIVKLTREIVPGMIVTGMEVAEIDGSPRMGPTFGAMMISGQKAAHLALKALGLPNALDGTLVGSLHPELILAAADSSETVDA 347
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chmo14g00940 347 NCBIfam sulfide-dependent adenosine diphosphate thiazole synthase 61 316 IPR002922 -
Chmo14g00940 347 FunFam Thiamine thiazole synthase, chloroplastic 81 316 - -
Chmo14g00940 347 Hamap Thiamine thiazole synthase, chloroplastic [THI4]. 2 325 IPR027495 GO:0009228(InterPro)
Chmo14g00940 347 PANTHER THIAMINE THIAZOLE SYNTHASE 11 346 - -
Chmo14g00940 347 Gene3D - 50 80 - -
Chmo14g00940 347 SUPERFAMILY FAD-NAD(P)-binding domain 44 309 IPR036188 -
Chmo14g00940 347 Gene3D - 81 316 IPR036188 -
Chmo14g00940 347 Pfam Thi4 family 65 298 - -
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chmo14g00940 K03146 cysteine-dependent adenosine diphosphate thiazole synthase [EC:2.4.2.60]
leaf

Event-related genes

Select Gene_1 Gene_2 Event_name
48101 Chmo14g00940 Chmo16g01018
48102 Chmo14g00940 Chmo17g00929
48103 Chmo14g00940 Chmo18g01004
216470 Chmo13g01000 Chmo14g00940
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
1433133 Chmo Chmo15g00872 Chmo-Chr15:50156075 Chmo14g00940 Chmo-Chr14:46752065
1493249 Chmo Chmo13g01000 Chmo-Chr13:52311635 Chmo14g00940 Chmo-Chr14:46752065
1501076 Chmo Chmo14g00940 Chmo-Chr14:46752065 Chmo16g01018 Chmo-Chr16:43571731
1501123 Chmo Chmo14g00940 Chmo-Chr14:46752065 Chmo17g00929 Chmo-Chr17:39114250
1501175 Chmo Chmo14g00940 Chmo-Chr14:46752065 Chmo18g01004 Chmo-Chr18:43150776