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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chmo15g00876 ATGGAGGATATGTTAGTTGCAATTGTATCGATGCTTTTAATTGCGGCGTTAGTTCCGCTTTATTTCTGGAGACGCCGTCAAGTTACTAATGAATCTCTTCATCAACATGAAGAAGAACCTCAGGTTCAGCAGAGAGAAGCTGTTGTAAGGCCTGCCGGTGCTGCTCGTAGTAGGATGCGTAGACGGAATACTTCAGCTGCCAGCACGTCATCTGCTCCACAAGCTGTAGAAGAAACTGAAGATGGAAGCGATGAGGAAGCTGTTGAAGGCGAATATTATAATGCAAAGAATTCAAAGAAGAAAGGCAGAAAGAAAGAGGAGCGCCAGGCAGCACGTCAGGCTGAAGAGGCGGCAAGGGAGTCAAGAAATACAAAACAAGACCGCTATGCAGAAATACGCAGGCGAAAGGATGAGGAACACGAAGCAAAAGAGCGTATGCTGGAGGAAGAAGCTGCGGCTCGAAAGGCCAAGGAGGAGGAAGCTGCAGCATTAGAGTTTGATAAGTGGAAAGGAGAATTTTCGGTAGATGCTGAAGGTACTACAGAAAATGAAGTTCAAGATGGAACCCAGGGTTTGCTTTATGATTTTGTGGAATACATCAAGAAACAGAAGTGTGTCCCCTTGGAAGATCTTGCTGCAGAATTCAAACTACGGACTCAGGATTGTATCAATCGAATCACTTCTTTGGAGGATATGGGGAGATTATCTGGTGTGATGGATGACAGAGGAAAATACATATACATCTCACATGAAGAAATGCAGGCAGTTGCAGACTATATCAAGCGTGAAGGGAGAGTCAGTATTGCCCATCTAGCAAGCCAGTCGAACCAGTTTATAGATTTGGAACCCAAAGCACAGTTTGTTGAGGATTTAAGCACTCAGGATGAAATTACAGTTGCTTAA 903 44.41 MEDMLVAIVSMLLIAALVPLYFWRRRQVTNESLHQHEEEPQVQQREAVVRPAGAARSRMRRRNTSAASTSSAPQAVEETEDGSDEEAVEGEYYNAKNSKKKGRKKEERQAARQAEEAARESRNTKQDRYAEIRRRKDEEHEAKERMLEEEAAARKAKEEEAAALEFDKWKGEFSVDAEGTTENEVQDGTQGLLYDFVEYIKKQKCVPLEDLAAEFKLRTQDCINRITSLEDMGRLSGVMDDRGKYIYISHEEMQAVADYIKREGRVSIAHLASQSNQFIDLEPKAQFVEDLSTQDEITVA 300
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chmo15g00876 300 MobiDBLite consensus disorder prediction 61 77 - -
Chmo15g00876 300 Coils Coil 97 124 - -
Chmo15g00876 300 Gene3D - 191 248 IPR036388 -
Chmo15g00876 300 SUPERFAMILY Winged helix DNA-binding domain 187 256 IPR036390 -
Chmo15g00876 300 MobiDBLite consensus disorder prediction 107 158 - -
Chmo15g00876 300 Pfam DDRGK domain 95 280 IPR019153 -
Chmo15g00876 300 SMART DDRGK-2 95 280 IPR019153 -
Chmo15g00876 300 MobiDBLite consensus disorder prediction 33 158 - -
Chmo15g00876 300 FunFam DDRGK domain-containing protein 1 191 248 - -
Chmo15g00876 300 Coils Coil 129 167 - -
Chmo15g00876 300 PANTHER DDRGK DOMAIN-CONTAINING PROTEIN 1 43 295 IPR050899 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chmo15g00876 K23344 DDRGK domain-containing protein 1
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Event-related genes

Select Gene_1 Gene_2 Event_name
213699 Chmo14g00941 Chmo15g00876
226306 Chmo15g00876 Chmo13g01001
239046 Chmo13g01001 Chmo15g00876
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
1310398 Chmo Chmo15g00876 Chmo-Chr15:50576089 Chmo9g04147 Chmo-Chr9:234108019
1494454 Chmo Chmo13g01001 Chmo-Chr13:52369179 Chmo15g00876 Chmo-Chr15:50576089
1500061 Chmo Chmo14g00941 Chmo-Chr14:46799030 Chmo15g00876 Chmo-Chr15:50576089