AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ceso2g03175 ATGAACATTTTACGAAAAGACCCTGGCCTACCCATTGATTCCTTCTACGAGCTTCGAGCTGGATGCACCGATGTTCCTGAAACCAAGTTTAAGATCAAGGCCGGAAAGACACTTAGCGTAAAAAGGTGGCGGGCTTCATTTTCACCAGAAGGGTCTCTTGATATAGGCAAGTGCCTTAGTCGAATCTATCGAGGAGGGGTTCATCCATCCATTAGAGGACAAGTGTGGGAATTTCTGCTTGGCTGCTATGATCCTAAAAGCACATATGATGAAAGAGAACAGATACGGAAAAGGCGAAGGGAGCAATATGCCGAGTTGAAAGATGCATGCAGTCATATGTTTCCTGTTGTCGGAAGTGGCAACTTCATCACTGCACGTGTGATCACAGCAAACGGCGATCCTATTCAAGATCCTGATCCTGGAAAGGTTTCAATACCACAATCTCAAGAAAATGCTGGTTCCACTACGGGTCCTCGCGAACAAGATAAGGACATAATCCAATGGAAGCTTGCTTTACACCAAATAGGCCTTGATGTGGTTCGAACAGATAGGACACTGATGTTTTACGAGAAGCAAGAGAATCTGGCAAAACTTTGGGATGTTCTTGCTGTGTATGCTTGGTTTGATAAAGATGTTGGTTATGGCCAAGGGATGAGTGATCTATGCTCCCCCATGATTATGCTTCTTGAAGATGAAGCAGATGCATTTTGGTGCTTTGAACGTCTAATGCGCAGATTGCGAGGTAATTTCAGATGCACGGGGAACACTGTTGGGGTTGAGGCACAACTCAGTATCTTGGCTAATGTCACCCAAGTTGTCGATCCTAAACTTCATCAGCACTTGGAACACCTAGGTGGAGGTGGTTACCTATTTGCGTTCCGGATGCTTATGGTGTTGTTTAGGCGAGAGTTTTCTTTCGGAGATTCATTGTACTTGTGGGAGATGATGTGGGCTTTGGAGTATGATCCAGGGCTGTTCTCTGTGTACGAGGGAGGTGAAAGGCAGCAGAAAGTGAAACGGAGATGGAAATCAAAACGACAATATGGCAAGTATGAGAGGAGAAACAAGGGATCGGAGGAGCTCCCTATATCTGTTTTCCTTGTAGCCAGTGTCCTCGAGGACAGGAGTGACAAGTTAATGACAGAAGCAAGGGGCTAG 1158 45.68 MNILRKDPGLPIDSFYELRAGCTDVPETKFKIKAGKTLSVKRWRASFSPEGSLDIGKCLSRIYRGGVHPSIRGQVWEFLLGCYDPKSTYDEREQIRKRRREQYAELKDACSHMFPVVGSGNFITARVITANGDPIQDPDPGKVSIPQSQENAGSTTGPREQDKDIIQWKLALHQIGLDVVRTDRTLMFYEKQENLAKLWDVLAVYAWFDKDVGYGQGMSDLCSPMIMLLEDEADAFWCFERLMRRLRGNFRCTGNTVGVEAQLSILANVTQVVDPKLHQHLEHLGGGGYLFAFRMLMVLFRREFSFGDSLYLWEMMWALEYDPGLFSVYEGGERQQKVKRRWKSKRQYGKYERRNKGSEELPISVFLVASVLEDRSDKLMTEARG 385
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ceso2g03175 385 Gene3D putative rabgap domain of human tbc1 domain family member 14 like domains 149 250 - -
Ceso2g03175 385 FunFam TBC1 domain family member 15-like 152 250 - -
Ceso2g03175 385 SUPERFAMILY Ypt-Rab-GAP domain of gyp1p 54 280 IPR035969 -
Ceso2g03175 385 MobiDBLite consensus disorder prediction 133 160 - -
Ceso2g03175 385 Gene3D - 256 384 - -
Ceso2g03175 385 SUPERFAMILY Ypt-Rab-GAP domain of gyp1p 258 381 IPR035969 -
Ceso2g03175 385 SMART tbc-4 63 345 IPR000195 -
Ceso2g03175 385 PANTHER TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN 58 381 - GO:0005096(PANTHER)|GO:0090630(PANTHER)
Ceso2g03175 385 ProSiteProfiles TBC-rab GAP domain profile. 66 320 IPR000195 -
Ceso2g03175 385 Pfam Rab-GTPase-TBC domain 155 326 IPR000195 -
Ceso2g03175 385 MobiDBLite consensus disorder prediction 142 160 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ceso2g03175 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
973259 Ceso Ceso2g03175 Ceso-Chr2:80408540 Ceso6g00466 Ceso-Chr6:6484012
999812 Ceso Ceso2g03175 Ceso-Chr2:80408540 Ceso4g01125 Ceso-Chr4:17495058