AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hetu33g00984 ATGAGGGGGGAACCGGGTAACGTTCTGTACGGCGAATGGAAAGTAGTTGATCAGTTTGCTAGAACCCTTCACACCCTATCCCTCCCCTCCCTCCTGATATTTTTTCCACTCAACCGCTATATAACCCCACACACCTCAATCATCTTCTTCACAACAAATTCAAGCTTCTTAAACTCATCAATGGCGTCCATGGCTACAACCTTTGCCTCATCTCTCTCAACCAAAGCCAACACTTCTTGCTTCGATCAATCATCCTTTTATGGCGTTCCGGTGTCATCTCCGGTCCGCATCCAGCCGGTCAAATCGAGCCAGAACAACAGGAACATGCAGATCTCGATGTCTGCATCTCCGTACGATCTCGGATCGTTCACTTTTCAACCGATCAAGGAGTCGATCGTGTCTCGTGAAATGACCAGACGGTACATGACAGATATGATTACGTACGCCGATACTGACGTCGTTGTCGTCGGTGCTGGCTCTGCTGGTCTCTCGTGCGCTTATGAGCTTAGCAAAAACCCTAACGTTCAGGTAGCCATCATCGAGCAGTCTGTGAGCCCCGGTGGTGGAGCATGGCTAGGAGGACAACTGTTTTCCGCCATGGTTGTCCGCAAACCAGCACACCACTTCCTTGACGAGCTTGAGATCGAGTACGACGAGCAAGAGGACTACGTCGTCATCAAGCACGCTGCTCTGTTTACCTCCACCATCATGAGCAAGCTTTTGGCCAGACCAAATGTGAAGCTCTTCAACGCGGTTGCCGCAGAGGACTTGATCATCAAGGGAGGAAGAGTAGGCGGTGTTGTGACCAACTGGGCTTTGGTGTCAATGAACCATGACACACAATCCTGCATGGACCCTAATGTGATGGAGGCCAAGGTGGTTGTGAGCTCATGTGGTCATGATGGTCCCATGGGTGCGACCGGTGTGAAGCGATTGAGGAGCGTTGGGATGATTGAGAGCGTTCCGGGAATGAAGGCTCTGGACATGAACACTGCCGAGGATGAAATTGTGAAGATGACCAGAGAGGTTGTTCCTGGCATGTTTGTCACCGGAATGGAAGTTGCCGAGATCGACGGATCTCCAAGAATGGGACCAACATTTGGGGCTATGATGATATCTGGTCAGAAGGCTGCTCATTTGGCATTGAAGGCGTTGGGGCTACCAAATGCTTTGGACGGAACACTCGTTGGAACCACGCAACCAGAGCTGATCCTTGCAGCTGCTGCTGATTCTGGTGAGAGTGTGGATGCCTAG 1254 51.2 MRGEPGNVLYGEWKVVDQFARTLHTLSLPSLLIFFPLNRYITPHTSIIFFTTNSSFLNSSMASMATTFASSLSTKANTSCFDQSSFYGVPVSSPVRIQPVKSSQNNRNMQISMSASPYDLGSFTFQPIKESIVSREMTRRYMTDMITYADTDVVVVGAGSAGLSCAYELSKNPNVQVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHHFLDELEIEYDEQEDYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIIKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPMGATGVKRLRSVGMIESVPGMKALDMNTAEDEIVKMTREVVPGMFVTGMEVAEIDGSPRMGPTFGAMMISGQKAAHLALKALGLPNALDGTLVGTTQPELILAAAADSGESVDA 417
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hetu33g00984 417 Gene3D - 150 385 IPR036188 -
Hetu33g00984 417 NCBIfam sulfide-dependent adenosine diphosphate thiazole synthase 130 385 IPR002922 -
Hetu33g00984 417 Gene3D - 119 149 - -
Hetu33g00984 417 Pfam Thi4 family 134 367 - -
Hetu33g00984 417 Hamap Thiamine thiazole synthase, chloroplastic [THI4]. 65 394 IPR027495 GO:0009228(InterPro)
Hetu33g00984 417 PANTHER THIAMINE THIAZOLE SYNTHASE 73 416 - -
Hetu33g00984 417 FunFam Thiamine thiazole synthase, chloroplastic 150 385 - -
Hetu33g00984 417 SUPERFAMILY FAD-NAD(P)-binding domain 112 378 IPR036188 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hetu33g00984 K03146 cysteine-dependent adenosine diphosphate thiazole synthase [EC:2.4.2.60]
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Event-related genes

Select Gene_1 Gene_2 Event_name
300048 Hetu31g00880 Hetu33g00984
301045 Hetu32g00925 Hetu33g00984
409880 Hetu16g02483 Hetu33g00984
410521 Hetu17g02341 Hetu33g00984
411273 Hetu18g02642 Hetu33g00984
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
3320129 Hetu Hetu18g02714 Hetu-Chr18:135914936 Hetu33g00984 Hetu-Chr33:42574629
3566202 Hetu Hetu16g02483 Hetu-Chr16:130496058 Hetu33g00984 Hetu-Chr33:42574629
3570741 Hetu Hetu17g02341 Hetu-Chr17:121696834 Hetu33g00984 Hetu-Chr33:42574629
3572959 Hetu Hetu18g02642 Hetu-Chr18:129058874 Hetu33g00984 Hetu-Chr33:42574629
3625058 Hetu Hetu31g00880 Hetu-Chr31:40049120 Hetu33g00984 Hetu-Chr33:42574629
3628488 Hetu Hetu32g00925 Hetu-Chr32:43814125 Hetu33g00984 Hetu-Chr33:42574629