AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stre6g00603 ATGGCGTCAATGGCTACAACCTTCGCTTCATCTCTCTCCACCAAGACCAGAACTTGTTTCTTCGATCAATCATCCTTCCATGGCGTTCCGGTGTCTTCTCCGATCCGGATCCAGCCGGTCAAATCGAACCAGAACAAAAACATGCAGATCACCATGTCTGCTGCTCCGTACGATCTCGGATCATTCACGTTTCAGCCGATCAAAGAATCGATCGTGTCTCGTGAAATGACCAGGAGGTACATGACTGATATGATTACATACGCTGATACCGACGTCGTTATCGTCGGTGCTGGCTCTGCTGGTCTCTCGTGCGCATATGAGATTAGCAAAAACCCTAACGTTCAGGTAGCCATCATCGAGCAGTCTGTGAGCCCCGGTGGTGGAGCATGGCTCGGAGGCCAACTATTTTCGGCCATGGTTGTCCGCAAACCCGCACACCACTTCCTCGACGAGCTCGAGATTGAGTACGACGAGCAAGAAGACTATGTTGTCATCAAACACGCGGCTCTGTTCACATCTACCATCATGAGCAAGCTTTTGGCTAGACCAAATGTCAAGCTCTTTAACGCGGTTGCAGCAGAGGACTTGATTATCAAGGGAGGAAGAGTAGGTGGTGTCGTGACCAACTGGGCTTTGGTGTCGATGAACCATGACACACAATCGTGCATGGACCCGAATGTGATGGAGGCTAAGGTGGTTGTGAGTTCATGTGGTCATGATGGTCCGATGGGTGCGACCGGAGTTAAGAGGCTAAGGAGTGTCGGAATGATCGAAAGCGTTCCCGGAATGAAAGCTCTTGACATGAACACTGCTGAGGATGAAATCGTGAAGATGACAAGAGAGGTTGTTCCTGGTATGATCGTCACCGGAATGGAAGTTGCTGAGATTGACGGATCTCCGAGAATGGGGCCGACATTTGGGGCTATGATGATATCTGGACAGAAGGCGGCTCATTTGGCATTGAAGGCGTTGGGGCTACCGAATGCGTTGGATGGAACAAGTGTCGGAACCATGCAACCTGAGCTGATCCTTGCTGCGGCTGATTCCGGTGAGACTGTGGATGCTTGA 1068 50.94 MASMATTFASSLSTKTRTCFFDQSSFHGVPVSSPIRIQPVKSNQNKNMQITMSAAPYDLGSFTFQPIKESIVSREMTRRYMTDMITYADTDVVIVGAGSAGLSCAYEISKNPNVQVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHHFLDELEIEYDEQEDYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIIKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPMGATGVKRLRSVGMIESVPGMKALDMNTAEDEIVKMTREVVPGMIVTGMEVAEIDGSPRMGPTFGAMMISGQKAAHLALKALGLPNALDGTSVGTMQPELILAAADSGETVDA 355
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stre6g00603 355 Gene3D - 58 88 - -
Stre6g00603 355 Gene3D - 89 324 IPR036188 -
Stre6g00603 355 PANTHER THIAMINE THIAZOLE SYNTHASE 9 354 - -
Stre6g00603 355 NCBIfam sulfide-dependent adenosine diphosphate thiazole synthase 69 324 IPR002922 -
Stre6g00603 355 Pfam Thi4 family 73 306 - -
Stre6g00603 355 FunFam Thiamine thiazole synthase, chloroplastic 89 324 - -
Stre6g00603 355 SUPERFAMILY FAD-NAD(P)-binding domain 48 317 IPR036188 -
Stre6g00603 355 Hamap Thiamine thiazole synthase, chloroplastic [THI4]. 5 333 IPR027495 GO:0009228(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stre6g00603 K03146 cysteine-dependent adenosine diphosphate thiazole synthase [EC:2.4.2.60]
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Event-related genes

Select Gene_1 Gene_2 Event_name
435552 Stre6g00603 Stre9g01531
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
5239011 Stre Stre6g00603 Stre-Chr6:16948160 Stre9g01531 Stre-Chr9:26996120