AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Laca7g03017 ATGGCGTCCATGGCTACCACCTTTGCCTCGTCTGTCTCCACAAAGACCAGGACCTCTTTCCTGGACCAATCATCGTTCCATGGCGTTCCGGTGGCTTCTCCGACGCGGATCCAACCAATCAAATCTAACCAAAGAAAGAACACACCGATCACCATGTCTGCTACCCCGTATGATCTCGGATCCTTCACCTTTAGTCCGATCAAGGAAGCGATCGTGTCTCGTGAAATGACGAGAAGGTACATGACTGATATGATTACCTATGCCGATACCGATGTCGTTGTAGTCGGCGCTGGCTCCGCTGGTCTCTCCTGTGCTTATGAGCTTAGCAAAAACCCTGACGTTCAGGTCGCCATCATCGAGCAATCTGTGAGCCCCGGAGGTGGAGCATGGCTCGGAGGTCAACTCTTCTCCGCCATGGTCGTCCGCAAGCCTGCACACCTCTTCCTCGACGAGCTTGAAATAGAGTACGACGAGCAAGAAGACTACGTAGTCATCAAGCACGCGGCTCTCTTCACCTCCACCATCATGAGCAAGCTCTTAGCCAGGCCAAACGTGAAGCTCTTCAACGCAGTAGCAGCCGAGGACTTAATCATCAAGGGAGGTAGAGTCAGTGGCGTTGTAACAAACTGGGCTTTAGTCGCAATGAACCACGACACACAATCCTGCATGGACCCAAATGTAATGGAGGCTAAAGTCGTTGTGAGTTCATGTGGACACGATGGACCCATGGGTGCTACAGGAGTGAAAAGGCTCCGAAGCGTTGGATTGATTGAGAGTGTTCCTGGGATGAAGGCTCTTGACATGAACGCTGCTGAAGATGCGATTGTGAAGTTGACTAGAGAGATTGTTCCTGGTATGATTGTTACAGGAATGGAAGTTGCAGAGATCGATGGATCTCCAAGAATGGGGCCGACGTTCGGGGCTATGATGATATCTGGACAGAAGGCTGCTCATTTGGCTTTGAGGGCTTTAGGGCTTCCGAATGCTTTGGATGGGACAAGTGTGGGAAGTGTTCATCCAGAGATGATTCTTGCTGCTGTTGATTCTGGTGAGACTGTGGATGCCTAA 1068 51.03 MASMATTFASSVSTKTRTSFLDQSSFHGVPVASPTRIQPIKSNQRKNTPITMSATPYDLGSFTFSPIKEAIVSREMTRRYMTDMITYADTDVVVVGAGSAGLSCAYELSKNPDVQVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHLFLDELEIEYDEQEDYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIIKGGRVSGVVTNWALVAMNHDTQSCMDPNVMEAKVVVSSCGHDGPMGATGVKRLRSVGLIESVPGMKALDMNAAEDAIVKLTREIVPGMIVTGMEVAEIDGSPRMGPTFGAMMISGQKAAHLALRALGLPNALDGTSVGSVHPEMILAAVDSGETVDA 355
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Laca7g03017 355 SUPERFAMILY FAD-NAD(P)-binding domain 52 317 IPR036188 -
Laca7g03017 355 FunFam Thiamine thiazole synthase, chloroplastic 89 324 - -
Laca7g03017 355 NCBIfam sulfide-dependent adenosine diphosphate thiazole synthase 69 323 IPR002922 -
Laca7g03017 355 Gene3D - 58 88 - -
Laca7g03017 355 PRINTS Adrenodoxin reductase family signature 115 128 - -
Laca7g03017 355 PRINTS Adrenodoxin reductase family signature 91 113 - -
Laca7g03017 355 PRINTS Adrenodoxin reductase family signature 259 272 - -
Laca7g03017 355 Gene3D - 89 324 IPR036188 -
Laca7g03017 355 PANTHER THIAMINE THIAZOLE SYNTHASE 11 354 - -
Laca7g03017 355 Hamap Thiamine thiazole synthase, chloroplastic [THI4]. 14 333 IPR027495 GO:0009228(InterPro)
Laca7g03017 355 Pfam Thi4 family 73 306 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Laca7g03017 K03146 cysteine-dependent adenosine diphosphate thiazole synthase [EC:2.4.2.60]
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Event-related genes

Select Gene_1 Gene_2 Event_name
115652 Laca5g00121 Laca7g03017
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
3763497 Laca Laca5g00121 Laca-Chr5:5168678 Laca7g03017 Laca-Chr7:144205478