AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ceso2g03177 ATGAAATCCCCTGGATTTCAGATCCAGTTCACAGACATGGTTTCCACAGCCAAGATCAAATCTGTTGATTTTTACAGGAAAATTCCAAGAGATTTGACAGAGGCGTCACTATCAGGTGCCGGCTTGTCTGTCATAGCAGCTGTTGCCATGATGTTTCTATTTGGAATGGAGCTACATAACTATTTGGCCATTAGTACCTCGACTTCTGTCATAGTTGATAGAAGTTCTGACGGGGATTACTTACGGATTGATTTTAATATTAGTTTACCGGCCTTATCCTGTGAGTTTGCATCTGTGGATGTGAGTGATGTACTGGGAACTAACAGGTTGAACATAACAAAAACAGTTCGCAAATATTCAATTGATAAACATCTACGAACTACTGGCTCTGAGTATGATTCTGGACCAGTTACTAATTTACTCAAGCACGATGATGAAGTTGATGAGGAATATGGTGAAGGATCTGTTACTCTAAATGCACGTAATTTTGATAGAATATCTCATCAGCATTCAATTTTGGTTGTGAATTTCTATGCTCCTTGGTGCTATTGGAGTAACCGTCTGAAACCCTCATGGGAGAAGGCAGCCAAAATTATGAGAGAAAGACATGATCCAGAAGTGGATGGTCGTATCATTATGGGCAAGGTGGACTGTACTGAAGAAGCTGATCTGTGTAGGAGGCACCACATACAAGGTTATCCGTCGATCCGGATATTCCGTAAGGGCAGTGATGTCAGGCAAGTCCCTGTGGACGAGCATGGGCACCACGAGCATGAATCATATTATGGTGACAGAGATACAGAGACCTTGGTGAATACAATGGAAAACTTGGTTGCACCTATTTCGTTGGAGTCACCAATCCTGGCCTTGGAGGACAAATCTGCAAAAAGACCTGCACCACGTGAAGCAGGATGTAGAATTGAAGGGTTTGTACGAGTCAAGAAGGTTCCTGGTAATCTTGTAATCTCAGCTCGTTCGGGGGCCCACTCCTTTGACGCTTCCCAGATGAACATGTCACATGTAATTTCTAGTTTTTCCTTCGGTAAGAGGATCAGTGGAAGGGTGATGAGTGATATGAAGCGAATATTACCTTACATTGGTGTAAGCCATGACAAGTTGAATGGCCAGTCATATCTCACTGACCCAGAAGATCGTGCCAACGTTACAATAGAGCATTATCTACAAGTCGTGAAGACGGAGGTTATGAGGTCATCTCATCAACTTATTGAGGATTACGAGTACACAGCACATAGTAGCTTGATGCATGCTCTTTCCATCCCTGTTGTAAAGTTCCATATTGAGCCATCTCCGATGCAGGTCTTGATAACGGAAAATTCCAAATCGTTTTCTCATTTCATCACCAACGTCTGTGCCATTATTGGTGGTGTTTTTACGGTTGCTGGGATACTGGATTCAATTCTGCACAACACTTTGAGATTGGTGAAAAAAGTTGAACTGGGGAAGAATTTTTAG 1473 42.5 MKSPGFQIQFTDMVSTAKIKSVDFYRKIPRDLTEASLSGAGLSVIAAVAMMFLFGMELHNYLAISTSTSVIVDRSSDGDYLRIDFNISLPALSCEFASVDVSDVLGTNRLNITKTVRKYSIDKHLRTTGSEYDSGPVTNLLKHDDEVDEEYGEGSVTLNARNFDRISHQHSILVVNFYAPWCYWSNRLKPSWEKAAKIMRERHDPEVDGRIIMGKVDCTEEADLCRRHHIQGYPSIRIFRKGSDVRQVPVDEHGHHEHESYYGDRDTETLVNTMENLVAPISLESPILALEDKSAKRPAPREAGCRIEGFVRVKKVPGNLVISARSGAHSFDASQMNMSHVISSFSFGKRISGRVMSDMKRILPYIGVSHDKLNGQSYLTDPEDRANVTIEHYLQVVKTEVMRSSHQLIEDYEYTAHSSLMHALSIPVVKFHIEPSPMQVLITENSKSFSHFITNVCAIIGGVFTVAGILDSILHNTLRLVKKVELGKNF 490
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ceso2g03177 490 SUPERFAMILY Thioredoxin-like 151 277 IPR036249 -
Ceso2g03177 490 PANTHER ENDOPLASMIC RETICULUM-GOLGI INTERMEDIATE COMPARTMENT PROTEIN 13 484 IPR045888 GO:0005783(PANTHER)|GO:0030134(PANTHER)
Ceso2g03177 490 Pfam Thioredoxin 156 248 IPR013766 -
Ceso2g03177 490 ProSiteProfiles Thioredoxin domain profile. 129 279 IPR013766 -
Ceso2g03177 490 CDD PDI-a-family 156 274 - -
Ceso2g03177 490 Pfam Endoplasmic reticulum vesicle transporter 298 471 IPR012936 -
Ceso2g03177 490 FunFam Protein disulfide-isomerase 5-4 143 302 - -
Ceso2g03177 490 Gene3D Glutaredoxin 146 298 - -
Ceso2g03177 490 Pfam Endoplasmic Reticulum-Golgi Intermediate Compartment (ERGIC) 19 109 IPR039542 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ceso2g03177 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
40050 Ceso1g04006 Ceso2g03177
40412 Ceso2g03177 Ceso4g01435
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
970283 Ceso Ceso1g04006 Ceso-Chr1:101723318 Ceso2g03177 Ceso-Chr2:80414292
970284 Ceso Ceso1g04007 Ceso-Chr1:101731534 Ceso2g03177 Ceso-Chr2:80414292
973261 Ceso Ceso2g03177 Ceso-Chr2:80414292 Ceso6g02978 Ceso-Chr6:77428512
999813 Ceso Ceso2g03177 Ceso-Chr2:80414292 Ceso4g01435 Ceso-Chr4:24566196