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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cien5g03452 ATGTCTGCCACACCGTATGATCTCGGATCATTCACCTTTAGTCCGATCAAGGAAGCAATCGTGTCTCGTGAAATGACGAGGAGGTACATGACTGATATGATTACCTACGCCGATACCGACGTCGTTGTAGTCGGTGCTGGCTCCGCTGGTCTCTCCTGCGCTTACGAGCTTAGCAAAAACCCTAACGTTCAGGTCGCCATCATTGAGCAATCTGTAAGCCCCGGCGGTGGAGCATGGCTCGGAGGCCAACTCTTCTCCGCCATGGTAGTCCGCAAGCCCGCCCACCTCTTCCTCGACGAGCTTGAAATCGAGTATGACGAGCAAGAAGACTACGTAGTCATCAAGCACGCCGCCCTGTTCACCTCCACGATCATGAGCAAGCTCTTAGCCAGGCCAAACGTGAAGCTCTTCAACGCAGTAGCAGCAGAGGACTTAATCATCAAGGGAGGTAGAGTCGGTGGTGTTGTAACCAACTGGGCTTTAGTCGCAATGAACCACGACACACAGTCATGCATGGACCCCAATGTGATGGAGGCGAAAGTGGTTGTTAGCTCATGTGGACACGATGGTCCCATGGGTGCCACCGGAGTCAAACGTCTAAGGAGCGTCGGAATGATTGAGAGTGTTCCGGGGATGAAGGCTCTTGACATGAACGCTGCTGAAGATGCGATTGTGAGGTTGACTAGAGAGATTGTTCCTGGTATGATCGTTACAGGAATGGAAGTTGCAGAGATCGATGGATCTCCAAGAATGGGGCCGACTTTTGGGGCTATGATGATATCTGGACAGAAGGCGGCTCATTTGGCTTTGAAGGCGTTGGGGTTGCCGAATGCTTTGGACGGGACAAGTGTGGGAAGTGTTCAGCCGGAGATGATTCTTGCAGCGGTTGATTCCGGTGAGACCGTGGATGCCTAA 915 52.57 MSATPYDLGSFTFSPIKEAIVSREMTRRYMTDMITYADTDVVVVGAGSAGLSCAYELSKNPNVQVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHLFLDELEIEYDEQEDYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIIKGGRVGGVVTNWALVAMNHDTQSCMDPNVMEAKVVVSSCGHDGPMGATGVKRLRSVGMIESVPGMKALDMNAAEDAIVRLTREIVPGMIVTGMEVAEIDGSPRMGPTFGAMMISGQKAAHLALKALGLPNALDGTSVGSVQPEMILAAVDSGETVDA 304
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cien5g03452 304 PRINTS Adrenodoxin reductase family signature 40 62 - -
Cien5g03452 304 PRINTS Adrenodoxin reductase family signature 208 221 - -
Cien5g03452 304 PRINTS Adrenodoxin reductase family signature 64 77 - -
Cien5g03452 304 NCBIfam sulfide-dependent adenosine diphosphate thiazole synthase 18 273 IPR002922 -
Cien5g03452 304 PANTHER THIAMINE THIAZOLE SYNTHASE 2 303 - -
Cien5g03452 304 Hamap Thiamine thiazole synthase, chloroplastic [THI4]. 1 282 IPR027495 GO:0009228(InterPro)
Cien5g03452 304 Pfam Thi4 family 22 255 - -
Cien5g03452 304 FunFam Thiamine thiazole synthase, chloroplastic 38 273 - -
Cien5g03452 304 SUPERFAMILY FAD-NAD(P)-binding domain 9 266 IPR036188 -
Cien5g03452 304 Gene3D - 38 273 IPR036188 -
Cien5g03452 304 Gene3D - 7 37 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cien5g03452 K03146 cysteine-dependent adenosine diphosphate thiazole synthase [EC:2.4.2.60]
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Event-related genes

Select Gene_1 Gene_2 Event_name
66570 Cien5g03452 Cien6g00068
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
1714641 Cien Cien5g03452 Cien-Chr5:80601186 Cien6g00068 Cien-Chr6:846705